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MK770119.1__QCW23897.1__AAS21_gp159__00159

Bact-Vir

MK770119.1__QCW23897.1__AAS21_gp159__00159

Identity

Accession:
MK770119 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Keyvirus› Pantoea_phage_vB_PagS_AAS21

TaxID: 2575261

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-67
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n6xA02 3.40.50.11290 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 43.0 3.61e-01 71.4% 55.6%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.59 39.0 3.24e-01 71.4% 36.9%
4zn0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 41.0 2.99e-01 76.8% 83.1%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.56 38.0 3.69e-01 85.7% 63.9%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.97e-01 76.8% 83.6%
3tdnA00 3.40.50.12600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 39.0 3.19e-01 80.4% 36.4%
2xi9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.50e-01 87.5% 72.9%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 45.0 3.71e-01 94.6% 97.1%
6sulA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.54 44.0 2.98e-01 92.9% 71.5%
8ajjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 37.0 2.94e-01 73.2% 99.1%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 3.37e-01 96.4% 43.5%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.14e-01 83.9% 100.0%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.52 44.0 3.29e-01 100.0% 45.5%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 33.0 3.82e-01 96.4% 94.9%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.52 41.0 3.90e-01 100.0% 73.3%
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.51 42.0 2.81e-01 98.2% 92.2%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.45e-01 80.4% 60.8%
3kzqA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 2.89e-01 98.2% 54.4%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.50 37.0 3.15e-01 82.1% 47.3%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.50 43.0 3.73e-01 100.0% 74.7%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 39.0 3.72e-01 89.3% 92.6%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.50 37.0 2.43e-01 83.9% 96.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973146 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 42.0 4.40e-01 71.4% 66.0%
1413813 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.67 42.0 4.33e-01 75.0% 65.5%
3989261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.67 42.0 4.23e-01 73.2% 61.8%
3990000 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 41.0 4.18e-01 75.0% 65.5%
3280386 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 41.0 4.16e-01 73.2% 67.3%
4033493 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 41.0 4.14e-01 75.0% 65.5%
1380293 207.6.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind 0.61 43.0 3.38e-01 92.9% 33.3%
4276957 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 38.0 3.88e-01 75.0% 63.6%
4989374 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.60 50.0 4.46e-01 98.2% 87.1%
5007113 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.60 45.0 3.45e-01 91.1% 35.4%
3559152 386.1.1.299 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30478 0.59 42.0 4.41e-01 91.1% 84.0%
3490047 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 43.0 4.27e-01 100.0% 75.0%
4126797 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 38.0 3.74e-01 75.0% 60.0%
3579412 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 41.0 3.99e-01 100.0% 64.6%
4262261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 37.0 3.81e-01 80.4% 65.5%
3286555 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 3.60e-01 83.9% 75.5%
3090020 3239.1.1.0 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 0.58 40.0 3.04e-01 73.2% 46.0%
5048597 4333.1.1.2 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.58 51.0 3.16e-01 100.0% 28.7%
4967892 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.57 32.0 2.84e-01 98.2% 36.7%
3461757 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 38.0 3.20e-01 83.9% 40.2%
4024657 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.57 44.0 2.59e-01 89.3% 24.7%
3490907 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 45.0 2.80e-01 91.1% 22.7%
4307219 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.56 36.0 3.68e-01 73.2% 67.3%
3614159 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 42.0 2.59e-01 83.9% 23.6%
5035557 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 4.01e-01 83.9% 82.0%
4930200 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.55 41.0 3.12e-01 94.6% 34.6%
3602759 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 38.0 3.77e-01 75.0% 70.0%
3275056 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.54 45.0 3.17e-01 100.0% 30.4%
5051640 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.54 45.0 3.33e-01 92.9% 40.7%
4000205 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.54 41.0 4.26e-01 85.7% 100.0%
4351809 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 41.0 4.07e-01 85.7% 91.7%
3391316 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 44.0 3.67e-01 98.2% 71.4%
4960280 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.28e-01 80.4% 61.1%
3416800 391.1.1.12 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › FnI_RECK 0.52 23.0 2.76e-01 92.9% 51.4%
3219050 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.41e-01 80.4% 72.5%
5076422 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.52 42.0 3.03e-01 92.9% 53.5%
3739944 109.4.1.570 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 0.51 37.0 2.07e-01 80.4% 8.2%
3748837 330.9.1.1 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p › Tnp_22_dsRBD 0.51 38.0 3.38e-01 85.7% 56.2%
2755458 316.1.1.26 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.51 44.0 3.02e-01 100.0% 47.4%
5037669 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.50 42.0 2.69e-01 100.0% 18.1%
3962676 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.50 38.0 3.63e-01 80.4% 90.8%