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MK770119.1__QCW23914.1__AAS21_gp176__00176

Bact-Vir

MK770119.1__QCW23914.1__AAS21_gp176__00176

Identity

Accession:
MK770119 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Keyvirus› Pantoea_phage_vB_PagS_AAS21

TaxID: 2575261

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-52
PDB
Domain cluster: representative
D2 medium residues 54-87
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 50.0 2.99e-01 100.0% 24.4%
3l09A03 3.30.70.2670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.60e-01 91.2% 100.0%
1zruC01 2.60.520.10 Mainly Beta › Sandwich › Triple-stranded beta-helix › Phage fibre proteins 0.50 36.0 2.71e-01 97.1% 33.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288900 3380.1.1.4 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › DUF3499 0.63 48.0 4.34e-01 100.0% 60.0%
3595896 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.54 42.0 4.02e-01 97.1% 84.4%
4016285 4.1.1.185 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2196 0.54 38.0 3.47e-01 100.0% 83.1%
D3 medium residues 101-139
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.76 68.0 5.05e-01 100.0% 81.9%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.72 64.0 4.10e-01 100.0% 79.6%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.71 60.0 4.18e-01 100.0% 91.0%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.71 52.0 4.40e-01 79.5% 76.9%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.71 61.0 3.52e-01 100.0% 11.5%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 60.0 4.53e-01 97.4% 65.3%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.70 61.0 4.73e-01 97.4% 77.1%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.70 56.0 4.25e-01 100.0% 96.3%
2pohA02 6.10.140.940 Special › Helix non-globular › Helix Hairpins › 0.64 57.0 4.53e-01 100.0% 74.0%
1i0zA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.64 53.0 3.51e-01 97.4% 78.6%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.62 51.0 3.55e-01 92.3% 35.2%
3wnkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 53.0 3.12e-01 100.0% 99.4%
1zbqA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 50.0 3.14e-01 100.0% 17.6%
2wa5A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.60 49.0 3.61e-01 92.3% 62.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3614615 1108.1.1.1 ↗ alpha complex topology › Zuotin homology domain (ZHD) › Zuotin homology domain (ZHD) › Zuotin homology domain (ZHD) › ZUO1-like_ZHD 0.75 62.0 4.20e-01 97.4% 25.7%
3295705 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.72 57.0 3.87e-01 97.4% 25.2%
3980438 4166.1.1.1 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › T6SS_VasE 0.71 58.0 3.67e-01 92.3% 18.4%
4279100 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.69 57.0 3.64e-01 94.9% 64.1%
None — 0.69 60.0 3.96e-01 97.4% 24.5%
5007853 101.1.2.192 ↗ alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.69 59.0 4.87e-01 97.4% 73.9%
3251029 7512.1.1.10 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.67 56.0 3.43e-01 94.9% 41.7%
4063438 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.67 57.0 4.35e-01 97.4% 74.2%
3166772 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.61 48.0 3.61e-01 92.3% 60.0%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.54 48.0 3.73e-01 97.4% 56.2%