←Back to structures

MK774614.2__QDB70453.1__CF8_0041__00041

Bact-Vir

MK774614.2__QDB70453.1__CF8_0041__00041

Identity

Accession:
MK774614 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Chaoshanvirus› Aeromonas_phage_CF8

TaxID: 2575324

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-132
PDB
Domain cluster: rep: NC_070958.1__YP_010668782.1__PQC08_gp241__00034__D34-128
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 49.0 4.62e-01 85.4% 81.6%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 38.0 3.95e-01 84.6% 70.0%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 44.0 3.02e-01 79.2% 77.4%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.57 41.0 3.03e-01 74.6% 28.7%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 40.0 2.84e-01 72.3% 35.8%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 37.0 3.97e-01 77.7% 78.9%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 43.0 3.33e-01 80.0% 83.0%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 38.0 3.98e-01 71.5% 94.4%
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.82e-01 72.3% 87.7%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 38.0 3.97e-01 71.5% 86.4%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 38.0 3.61e-01 73.1% 83.3%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.54 41.0 3.39e-01 87.7% 46.2%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 40.0 2.82e-01 79.2% 82.2%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 44.0 4.50e-01 90.8% 100.0%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 40.0 3.19e-01 79.2% 72.4%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 39.0 4.30e-01 99.2% 100.0%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 37.0 3.94e-01 90.8% 84.1%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.52 36.0 3.13e-01 71.5% 50.5%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 38.0 3.50e-01 87.7% 57.7%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 43.0 4.08e-01 99.2% 76.8%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 35.0 3.79e-01 70.8% 84.8%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 37.0 3.92e-01 90.8% 84.7%
3s4kA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 36.0 3.73e-01 73.1% 95.2%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 45.0 4.26e-01 95.4% 91.4%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.51 42.0 3.28e-01 90.0% 70.6%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 33.0 3.36e-01 80.8% 67.5%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3326287 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.70 51.0 5.36e-01 75.4% 99.2%
4629131 9.29.1.1 ↗ beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.69 42.0 4.39e-01 73.1% 65.0%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.66 56.0 4.99e-01 88.5% 74.9%
3933957 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.65 55.0 5.10e-01 88.5% 80.0%
3173251 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.64 54.0 4.90e-01 89.2% 80.6%
3965263 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.62 37.0 4.60e-01 77.7% 96.2%
5062234 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.62 35.0 3.70e-01 82.3% 60.8%
3839269 5084.5.3.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.61 44.0 2.76e-01 73.8% 48.9%
3169657 4099.1.1.47 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 0.59 43.0 4.58e-01 74.6% 89.6%
3783604 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.59 42.0 3.54e-01 72.3% 82.3%
3783000 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 42.0 4.75e-01 93.8% 100.0%
4298119 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.57 44.0 3.29e-01 80.0% 73.7%
3615728 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.57 42.0 2.94e-01 76.9% 26.1%
3248518 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.56 36.0 3.69e-01 72.3% 67.5%
3989339 12.3.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.56 40.0 3.08e-01 73.8% 51.6%
3952882 331.3.1.27 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.54 42.0 3.79e-01 80.8% 68.4%
3164124 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.54 40.0 4.14e-01 76.9% 91.7%
3261416 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.54 41.0 4.07e-01 80.0% 77.9%
5038819 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 3.33e-01 81.5% 90.3%
4523830 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.53 36.0 3.87e-01 73.1% 80.9%
3216011 243.1.1.109 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382, DUF5382_C 0.53 38.0 2.92e-01 74.6% 60.0%
4581432 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 39.0 3.49e-01 76.9% 90.6%
4172098 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.53 45.0 3.91e-01 93.1% 81.5%
3716012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.92e-01 84.6% 81.5%
3451281 71.1.1.12 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.51 45.0 3.50e-01 100.0% 45.3%
3273410 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.50 44.0 3.89e-01 93.1% 66.5%