Back to structures

MK796797.2__QCQ65296.1__X14_000023__00023

Bact-Vir

MK796797.2__QCQ65296.1__X14_000023__00023

Identity

Accession:
MK796797 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-46
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 46.0 4.07e-01 71.4% 43.8%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 46.0 4.17e-01 73.8% 49.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 48.0 4.55e-01 78.6% 61.5%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 46.0 3.22e-01 71.4% 27.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 48.0 4.26e-01 76.2% 52.5%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.77e-01 81.0% 80.0%
4gv2A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.67 52.0 3.48e-01 97.6% 94.8%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 44.0 3.83e-01 73.8% 44.6%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.18e-01 76.2% 58.8%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.65 46.0 4.40e-01 78.6% 80.4%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.65 37.0 2.89e-01 88.1% 24.4%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 46.0 2.89e-01 95.2% 12.9%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 44.0 4.35e-01 78.6% 69.6%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 44.0 3.86e-01 76.2% 49.3%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 42.0 3.13e-01 71.4% 31.9%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.62 41.0 2.99e-01 76.2% 22.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 40.0 3.62e-01 71.4% 43.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 3.92e-01 78.6% 56.9%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.62 40.0 3.28e-01 71.4% 32.6%
4ojuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.61 39.0 2.78e-01 78.6% 18.3%
4zn0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 40.0 2.77e-01 73.8% 17.5%
4j31A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 42.0 2.48e-01 73.8% 8.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 43.0 4.18e-01 83.3% 68.1%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 50.0 3.86e-01 97.6% 42.2%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.60 44.0 3.08e-01 85.7% 22.9%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.57e-01 78.6% 53.9%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 40.0 3.05e-01 85.7% 28.2%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 37.0 3.16e-01 73.8% 36.1%
3fcrA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 44.0 2.97e-01 85.7% 51.4%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 41.0 2.80e-01 78.6% 40.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.23e-01 78.6% 35.4%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.57 44.0 3.64e-01 100.0% 43.9%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 46.0 3.04e-01 92.9% 70.5%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 3.23e-01 97.6% 37.4%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 3.08e-01 76.2% 92.2%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 40.0 3.17e-01 76.2% 88.1%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 43.0 2.77e-01 92.9% 16.4%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 39.0 3.11e-01 76.2% 90.8%
2n1hA00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.55 38.0 3.08e-01 76.2% 52.1%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 37.0 2.76e-01 88.1% 23.5%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.55 38.0 3.03e-01 78.6% 85.2%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 37.0 2.69e-01 78.6% 22.7%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 42.0 3.34e-01 97.6% 89.4%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.54 41.0 3.66e-01 100.0% 86.8%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.53 37.0 3.28e-01 73.8% 48.6%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 39.0 3.67e-01 88.1% 64.9%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 41.0 2.84e-01 88.1% 75.8%
5df7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 2.39e-01 100.0% 41.1%
3bjeA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 40.0 2.41e-01 88.1% 40.4%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 2.95e-01 85.7% 42.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016514 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 50.0 3.37e-01 83.3% 20.6%
4025781 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 50.0 4.57e-01 90.5% 56.7%
4957888 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.69 49.0 4.45e-01 78.6% 55.0%
4003604 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 46.0 3.46e-01 73.8% 28.6%
4002261 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 48.0 2.70e-01 78.6% 7.0%
4442636 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.67 46.0 2.65e-01 73.8% 7.0%
None 0.67 47.0 2.70e-01 73.8% 8.5%
5043126 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 46.0 4.00e-01 73.8% 58.5%
4986017 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 47.0 4.02e-01 78.6% 55.7%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.01e-01 78.6% 50.0%
3919221 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.64 45.0 3.80e-01 85.7% 42.7%
3692799 2003.1.2.65 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 0.64 45.0 2.50e-01 73.8% 6.1%
3336541 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.64 43.0 2.58e-01 71.4% 11.1%
4939039 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.64 42.0 2.69e-01 71.4% 13.5%
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.63 44.0 3.59e-01 78.6% 36.7%
3405538 219.1.1.111 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.63 48.0 2.91e-01 85.7% 42.0%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.63 44.0 3.64e-01 78.6% 43.5%
3696612 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.63 45.0 2.61e-01 81.0% 30.1%
3602511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 3.74e-01 73.8% 45.7%
5001406 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.62 32.0 2.51e-01 78.6% 22.2%
4948506 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.62 41.0 2.43e-01 73.8% 7.7%
4153913 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 45.0 3.64e-01 81.0% 69.4%
3633647 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.61 41.0 3.65e-01 71.4% 67.7%
3816093 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.61 42.0 2.58e-01 76.2% 11.7%
3435779 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.61 41.0 3.84e-01 71.4% 54.5%
None 0.61 47.0 2.88e-01 100.0% 93.1%
3842631 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.60 41.0 3.57e-01 73.8% 51.4%
3954823 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.60 41.0 2.81e-01 76.2% 18.4%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 43.0 3.49e-01 78.6% 44.4%
4482227 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.60 41.0 2.55e-01 76.2% 12.5%
4145939 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.60 42.0 3.67e-01 78.6% 51.4%
4985184 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.59 46.0 3.85e-01 95.2% 54.1%
4167784 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.59 41.0 3.61e-01 78.6% 50.0%
3400449 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 3.13e-01 97.6% 63.4%
5039642 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.57 39.0 3.21e-01 73.8% 97.3%
3521805 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.57 38.0 3.27e-01 71.4% 46.7%
3269220 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.56 38.0 2.42e-01 73.8% 21.3%
3480502 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.37e-01 88.1% 6.3%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.56 38.0 3.78e-01 81.0% 68.2%
3485317 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 42.0 2.35e-01 88.1% 6.2%
4202291 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.55 38.0 3.41e-01 78.6% 50.0%
5014685 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 38.0 3.44e-01 78.6% 55.4%
3238367 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.54 38.0 3.31e-01 78.6% 46.7%
4945021 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 2.88e-01 76.2% 54.5%
3604394 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.54 43.0 3.31e-01 90.5% 70.0%
4932308 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.54 36.0 3.69e-01 85.7% 82.9%
3389592 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 42.0 3.40e-01 97.6% 98.1%
3967552 375.1.1.71 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387 0.53 37.0 3.71e-01 81.0% 68.9%
3262364 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 41.0 3.03e-01 85.7% 46.4%
5047082 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 41.0 3.40e-01 100.0% 100.0%
4989647 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.52 35.0 3.36e-01 81.0% 56.4%
3721249 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 40.0 3.71e-01 90.5% 89.1%
3425088 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.51 37.0 3.43e-01 90.5% 83.1%