Back to structures

MK798142.1__QDH45594.1__AAM22_gp19__00019

Bact-Vir

MK798142.1__QDH45594.1__AAM22_gp19__00019

Identity

Accession:
MK798142 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-103
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.65 49.0 4.71e-01 84.2% 69.2%
2cw8A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 34.0 2.89e-01 77.2% 31.4%
2m71A00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.60 39.0 3.97e-01 76.2% 68.4%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 31.0 3.53e-01 76.2% 68.0%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.57 35.0 2.87e-01 76.2% 33.5%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 40.0 4.36e-01 77.2% 100.0%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 4.49e-01 100.0% 97.6%
2ia0B02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.55 42.0 4.32e-01 100.0% 83.8%
2yx1A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 34.0 4.04e-01 81.2% 97.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 39.0 3.31e-01 77.2% 49.7%
2imqX00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 47.0 3.41e-01 98.0% 44.6%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 37.0 4.13e-01 74.3% 97.5%
3mtjA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 36.0 4.11e-01 72.3% 97.4%
3tqeA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 35.0 4.01e-01 75.2% 100.0%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 34.0 2.76e-01 94.1% 36.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3454258 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.70 39.0 4.20e-01 79.2% 64.7%
4171345 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 36.0 3.78e-01 75.2% 53.7%
3240363 304.8.1.59 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › BTRD1 0.68 60.0 4.48e-01 99.0% 96.6%
3981894 304.8.1.25 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF5609 0.63 38.0 4.54e-01 97.0% 92.3%
5025304 304.24.1.5 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.63 36.0 4.33e-01 91.1% 87.7%
3164278 304.8.1.25 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF5609 0.62 41.0 4.33e-01 94.1% 75.6%
4996402 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 33.0 3.40e-01 71.3% 53.7%
5043257 304.24.1.5 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.59 35.0 4.13e-01 81.2% 89.2%
4971295 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 37.0 3.79e-01 73.3% 70.5%
4669669 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 37.0 3.58e-01 77.2% 63.6%
7885 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.53 47.0 3.41e-01 98.0% 44.6%
5059543 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.52 40.0 3.32e-01 84.2% 85.3%
D2 high residues 400-486
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 61.0 3.71e-01 100.0% 13.9%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 64.0 6.15e-01 100.0% 93.9%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 62.0 5.94e-01 100.0% 100.0%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 48.0 4.83e-01 100.0% 75.0%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 60.0 5.86e-01 100.0% 93.6%
4j3vA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 48.0 5.06e-01 100.0% 87.0%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 40.0 4.25e-01 98.9% 74.4%
5brqA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 42.0 4.32e-01 100.0% 75.3%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.61 50.0 4.19e-01 93.1% 97.4%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 53.0 5.07e-01 100.0% 85.1%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 47.0 4.76e-01 100.0% 84.3%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 46.0 4.45e-01 98.9% 77.1%
2xbtA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.58 52.0 4.27e-01 100.0% 60.8%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.58 44.0 3.31e-01 81.6% 40.8%
2rikA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.60e-01 100.0% 83.7%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.87e-01 83.9% 91.2%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.56 50.0 3.73e-01 100.0% 41.9%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 4.53e-01 100.0% 82.2%
2zahA02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.71e-01 100.0% 55.5%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.53e-01 71.3% 69.3%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.45e-01 83.9% 76.0%
2ds4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.44e-01 98.9% 83.8%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.54 47.0 3.51e-01 100.0% 97.9%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.08e-01 100.0% 79.9%
2di7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.37e-01 98.9% 85.0%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 46.0 4.05e-01 100.0% 79.9%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 3.79e-01 88.5% 85.9%
4cucA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.23e-01 100.0% 88.8%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.13e-01 97.7% 80.2%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 36.0 3.32e-01 71.3% 71.4%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.03e-01 100.0% 90.6%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 3.65e-01 100.0% 98.9%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 36.0 3.10e-01 74.7% 70.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.79e-01 72.4% 94.7%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 37.0 3.29e-01 79.3% 67.1%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 4.30e-01 100.0% 93.8%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.21e-01 98.9% 91.3%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.51 40.0 3.38e-01 90.8% 89.8%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 4.07e-01 100.0% 87.5%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 43.0 3.44e-01 100.0% 100.0%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.42e-01 80.5% 99.2%
1y8qB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 39.0 2.94e-01 85.1% 49.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053995 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.69 46.0 4.91e-01 100.0% 80.0%
1714453 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.68 62.0 6.09e-01 100.0% 96.8%
1714450 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.68 62.0 6.10e-01 100.0% 92.6%
3257125 4182.1.1.2 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.67 61.0 5.99e-01 100.0% 96.8%
4205385 12.1.1.6 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_42C 0.67 39.0 4.33e-01 100.0% 72.9%
5027244 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 43.0 4.91e-01 98.9% 96.7%
3472372 11.1.1.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.64 46.0 4.33e-01 90.8% 62.9%
3976897 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 55.0 4.93e-01 100.0% 80.0%
3289729 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.61 44.0 4.21e-01 100.0% 63.8%
5052205 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 49.0 2.96e-01 92.0% 18.1%
3606302 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 42.0 3.28e-01 73.6% 56.9%
3933402 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.59 52.0 4.78e-01 100.0% 83.5%
3580256 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 44.0 4.38e-01 98.9% 76.8%
4929824 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 45.0 3.86e-01 85.1% 78.6%
5047633 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.57 51.0 4.85e-01 100.0% 91.4%
4211051 10.32.1.19 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.57 50.0 4.78e-01 100.0% 98.1%
4311943 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.56 48.0 4.42e-01 100.0% 82.5%
5055500 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 44.0 4.62e-01 96.6% 100.0%
3922431 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.61e-01 97.7% 83.8%
4992460 222.1.1.43 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF2103 0.56 37.0 3.70e-01 70.1% 65.9%
4957007 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.56 44.0 3.95e-01 87.4% 84.8%
1158445 10.32.1.45 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4465 0.54 47.0 3.51e-01 100.0% 97.9%
3215260 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.54 46.0 4.03e-01 98.9% 91.4%
5000597 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.54 47.0 4.07e-01 100.0% 80.0%
3241390 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 45.0 3.80e-01 100.0% 65.0%
3627895 11.1.1.1163 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM132_3rd 0.53 45.0 3.68e-01 100.0% 49.1%
2879296 10.32.1.78 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PirA-like 0.52 45.0 4.34e-01 96.6% 100.0%
2756224 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 39.0 3.60e-01 80.5% 76.5%
4975805 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.52 44.0 2.82e-01 100.0% 21.4%
3738504 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 40.0 3.72e-01 83.9% 82.7%
4949878 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.51 34.0 3.26e-01 70.1% 100.0%
3518476 11.1.1.647 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GAE_BBS1 0.51 43.0 4.09e-01 100.0% 80.0%
3214839 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 43.0 3.65e-01 100.0% 90.0%
4196609 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.50 38.0 3.46e-01 81.6% 88.3%
3259207 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 45.0 4.06e-01 100.0% 84.0%
4946344 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 3.02e-01 72.4% 64.8%
4446877 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.50 36.0 2.57e-01 74.7% 78.9%
3497850 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 2.88e-01 72.4% 51.5%
4346133 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 35.0 3.05e-01 86.2% 45.1%