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MK798142.1__QDH45600.1__AAM22_gp25__00025

Bact-Vir

MK798142.1__QDH45600.1__AAM22_gp25__00025

Identity

Accession:
MK798142 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-28_40-67
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.73 65.0 5.67e-01 100.0% 77.8%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 4.51e-01 100.0% 41.2%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.72 63.0 5.47e-01 100.0% 86.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 5.49e-01 100.0% 70.8%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.71 61.0 5.05e-01 100.0% 77.8%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.71 61.0 4.46e-01 100.0% 43.6%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.70 45.0 3.44e-01 87.5% 29.6%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 61.0 3.98e-01 100.0% 26.6%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.69 54.0 4.16e-01 87.5% 79.3%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 55.0 4.18e-01 87.5% 64.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 52.0 5.41e-01 83.3% 100.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 4.67e-01 100.0% 60.9%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 51.0 3.84e-01 87.5% 78.7%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 55.0 4.09e-01 93.8% 72.7%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 3.89e-01 87.5% 48.6%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.02e-01 100.0% 77.9%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.47e-01 100.0% 65.2%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 47.0 3.56e-01 81.2% 67.5%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 46.0 4.01e-01 79.2% 77.3%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.18e-01 100.0% 91.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 4.93e-01 100.0% 88.9%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 52.0 4.81e-01 97.9% 89.2%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 51.0 3.06e-01 91.7% 74.4%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 46.0 3.06e-01 83.3% 21.1%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.07e-01 97.9% 20.7%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.61 50.0 3.43e-01 100.0% 25.6%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 51.0 3.78e-01 93.8% 72.0%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 44.0 3.46e-01 79.2% 59.6%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.76e-01 97.9% 86.4%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.60 49.0 2.93e-01 87.5% 19.2%
5eb9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.31e-01 81.2% 79.5%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 4.42e-01 91.7% 80.7%
2q5wE00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.58 45.0 3.34e-01 89.6% 75.2%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.58 51.0 4.61e-01 100.0% 81.5%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 41.0 2.92e-01 77.1% 34.4%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 3.88e-01 85.4% 64.4%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.02e-01 100.0% 81.8%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.57 47.0 3.46e-01 100.0% 74.0%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.56 37.0 2.78e-01 72.9% 89.5%
1r4wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 47.0 3.13e-01 97.9% 97.6%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 44.0 2.88e-01 97.9% 86.3%
2bmbA02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.55 44.0 2.70e-01 89.6% 31.1%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.25e-01 87.5% 64.1%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.03e-01 100.0% 69.6%
3fbxA00 3.60.60.30 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › 0.53 44.0 2.60e-01 100.0% 19.8%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 46.0 4.38e-01 100.0% 100.0%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 47.0 3.86e-01 100.0% 73.9%
8ediA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.21e-01 81.2% 91.2%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.53 34.0 3.20e-01 97.9% 50.0%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.53 41.0 2.81e-01 95.8% 55.3%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 40.0 3.05e-01 100.0% 46.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3392130 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.76 69.0 6.19e-01 100.0% 80.0%
3254941 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.73 65.0 4.72e-01 100.0% 44.6%
3939175 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.73 64.0 4.49e-01 100.0% 39.3%
5022745 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 4.90e-01 100.0% 69.5%
3716128 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.71 61.0 3.78e-01 100.0% 29.7%
3519115 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 61.0 3.71e-01 100.0% 26.2%
3514126 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.71 57.0 4.06e-01 89.6% 85.7%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.21e-01 100.0% 73.8%
5000725 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 4.65e-01 93.8% 91.0%
3738161 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.70 60.0 4.50e-01 100.0% 48.8%
3174427 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.70 60.0 4.27e-01 100.0% 40.0%
3586876 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 55.0 4.64e-01 89.6% 84.7%
4021623 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 56.0 3.98e-01 89.6% 83.4%
3407895 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.69 55.0 4.00e-01 89.6% 86.4%
790 58.1.1.1 beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 0.69 54.0 4.16e-01 87.5% 79.3%
5042614 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.40e-01 100.0% 71.4%
3626927 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 52.0 5.03e-01 95.8% 74.5%
4250120 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 56.0 4.28e-01 93.8% 80.9%
5018120 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.68 51.0 4.68e-01 83.3% 63.1%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 4.44e-01 95.8% 49.0%
3743760 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.67 50.0 3.83e-01 81.2% 85.5%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.32e-01 100.0% 78.5%
4938769 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.66 52.0 4.27e-01 87.5% 68.9%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.37e-01 100.0% 81.7%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.02e-01 100.0% 72.9%
3586665 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 53.0 5.07e-01 97.9% 78.2%
4528707 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 54.0 4.22e-01 97.9% 92.7%
648 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 54.0 4.53e-01 100.0% 68.2%
4659972 2003.1.2.56 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_9 0.63 53.0 3.06e-01 93.8% 22.1%
4974942 7516.1.1.26 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.63 48.0 2.85e-01 83.3% 14.8%
4656422 2003.1.3.23 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_9 0.63 53.0 3.05e-01 93.8% 23.9%
4444947 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 54.0 4.33e-01 100.0% 84.2%
3606532 2484.6.1.0 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.61 46.0 3.77e-01 81.2% 44.4%
3928760 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.61 49.0 3.00e-01 97.9% 23.3%
4437811 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 50.0 3.59e-01 93.8% 68.7%
3583473 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 51.0 3.14e-01 95.8% 24.8%
3395280 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 48.0 2.83e-01 93.8% 52.6%
3451750 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 41.0 3.97e-01 72.9% 65.5%
3758536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.36e-01 100.0% 70.0%
4466861 230.4.1.1 a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.59 47.0 3.46e-01 87.5% 47.2%
3230771 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 44.0 3.71e-01 93.8% 46.7%
3557388 2492.1.1.8 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.57 45.0 3.06e-01 91.7% 76.7%
3499526 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.56 45.0 2.61e-01 100.0% 37.4%
4028468 1.1.7.35 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.55 45.0 3.50e-01 89.6% 76.2%
5081581 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 46.0 3.03e-01 97.9% 34.8%
3246575 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 38.0 2.48e-01 97.9% 16.2%
4937517 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.53 40.0 2.53e-01 83.3% 15.6%
4636538 3264.1.1.0 0.53 44.0 3.15e-01 100.0% 30.0%
3461521 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 41.0 3.26e-01 91.7% 48.7%
3458699 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.53 42.0 3.09e-01 97.9% 33.7%
5074458 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.52 41.0 2.98e-01 97.9% 98.8%
3613692 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.51 42.0 3.38e-01 97.9% 96.4%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.51 37.0 3.10e-01 87.5% 69.5%
3286068 3708.1.1.1 a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.51 38.0 3.33e-01 91.7% 58.9%