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MK798142.1__QDH45665.1__AAM22_gp90__00090

Bact-Vir

MK798142.1__QDH45665.1__AAM22_gp90__00090

Identity

Accession:
MK798142 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantoea_phage_vB_PagM_AAM22

TaxID: 2588092

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-51
PDB
Domain cluster: rep: MH443101.1__AXH43579.1__MZUP2_610__00061__D3-56
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.72 54.0 5.20e-01 100.0% 71.7%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.71 43.0 3.82e-01 74.5% 44.3%
4at7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.69 60.0 4.09e-01 100.0% 40.8%
3l86A00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.67 54.0 3.61e-01 100.0% 31.8%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.66 48.0 3.41e-01 96.1% 25.8%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.38e-01 88.2% 83.5%
3daxB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 53.0 3.14e-01 98.0% 28.5%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 42.0 3.71e-01 94.1% 43.6%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.64 43.0 4.46e-01 94.1% 75.0%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.63 48.0 4.76e-01 100.0% 83.9%
4qozB02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 45.0 2.94e-01 100.0% 18.0%
2kngA01 4.10.320.10 Few Secondary Structures › Irregular › Dihydrolipoamide Transferase › E3-binding domain 0.62 41.0 4.38e-01 78.4% 81.4%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.61 49.0 3.90e-01 96.1% 57.8%
6wh0A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 52.0 3.79e-01 100.0% 87.5%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.58 46.0 3.20e-01 94.1% 26.7%
2fyfA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 47.0 3.88e-01 98.0% 81.0%
3n28A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 44.0 3.22e-01 86.3% 83.1%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 43.0 3.33e-01 82.4% 63.8%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.57 46.0 3.86e-01 88.2% 54.3%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 46.0 3.20e-01 90.2% 54.1%
1h3mB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 41.0 2.76e-01 82.4% 86.7%
1ze0A02 1.10.4070.10 Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain 0.56 48.0 4.22e-01 100.0% 70.5%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 40.0 3.25e-01 76.5% 82.7%
3b4uA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 2.91e-01 100.0% 45.6%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 4.19e-01 88.2% 84.2%
3cm0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.04e-01 98.0% 87.5%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.53 42.0 3.30e-01 94.1% 38.4%
3iwaA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.95e-01 100.0% 24.5%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 41.0 3.38e-01 100.0% 55.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587655 829.1.1.0 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB 0.73 62.0 5.51e-01 100.0% 66.7%
3351913 3238.1.1.1 ↗ alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF 0.72 52.0 3.40e-01 92.2% 17.4%
3437890 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 4.92e-01 96.1% 56.8%
3405001 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.67 49.0 3.69e-01 78.4% 44.8%
3598193 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 50.0 3.88e-01 100.0% 39.0%
3802814 2488.1.1.18 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW 0.66 53.0 3.32e-01 96.1% 16.1%
4268341 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.63 52.0 3.26e-01 94.1% 84.4%
3596100 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.62 52.0 3.52e-01 98.0% 93.2%
4049531 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.62 50.0 3.19e-01 94.1% 86.0%
3811150 3525.1.1.1 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.62 50.0 4.56e-01 100.0% 66.7%
3602143 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.62 47.0 3.00e-01 88.2% 17.5%
5023516 3922.1.1.269 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook 0.61 46.0 2.92e-01 86.3% 17.4%
4192980 7572.1.1.0 ↗ a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain 0.61 52.0 3.71e-01 100.0% 98.8%
4988619 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 40.0 3.70e-01 70.6% 51.4%
4003864 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.60 50.0 3.99e-01 100.0% 46.4%
4636911 4974.1.1.2 ↗ alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain › Cas13a_endoribonuclease 0.59 51.0 3.66e-01 100.0% 33.5%
3629005 3722.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.58 45.0 2.95e-01 86.3% 19.1%
3471229 148.1.3.13 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.58 49.0 3.03e-01 100.0% 15.9%
4449193 1134.1.2.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain 0.57 46.0 4.50e-01 98.0% 80.0%
4286954 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 47.0 4.22e-01 96.1% 65.7%
5029796 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 42.0 3.15e-01 86.3% 33.3%
3225949 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.57 48.0 3.37e-01 92.2% 34.0%
3924238 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.56 46.0 2.98e-01 90.2% 19.6%
4123079 4168.1.1.0 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.55 42.0 4.14e-01 82.4% 76.4%
3595326 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 44.0 4.12e-01 98.0% 95.7%
3636705 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 42.0 2.62e-01 96.1% 14.4%
4517683 4168.1.1.0 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.54 37.0 3.66e-01 72.5% 81.8%
4337722 3001.1.1.1 ↗ alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.53 37.0 3.17e-01 74.5% 44.7%
3207317 192.7.1.23 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › zf-C4pol 0.53 46.0 3.65e-01 100.0% 49.0%
4249869 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.53 43.0 2.79e-01 100.0% 37.9%
3598062 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 3.15e-01 100.0% 43.3%
4984959 3758.1.1.113 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook 0.50 45.0 2.72e-01 100.0% 45.8%