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MK798144.1__QDH45819.1__PSKM_gp62__00062
Bact-VirMK798144.1__QDH45819.1__PSKM_gp62__00062
Identity
- Accession:
- MK798144 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
TaxID: 2588094
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-69
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.74 | 58.0 | 5.50e-01 | 100.0% | 72.4% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.71 | 53.0 | 5.32e-01 | 100.0% | 79.1% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 44.0 | 3.65e-01 | 100.0% | 38.1% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.66 | 56.0 | 3.78e-01 | 100.0% | 42.9% |
| 4emeC02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.64 | 55.0 | 4.43e-01 | 100.0% | 72.6% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 50.0 | 4.45e-01 | 100.0% | 58.9% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 41.0 | 3.87e-01 | 100.0% | 55.1% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.62 | 40.0 | 3.35e-01 | 100.0% | 35.9% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 41.0 | 3.13e-01 | 100.0% | 27.4% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 48.0 | 3.78e-01 | 98.5% | 39.2% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.62 | 52.0 | 4.98e-01 | 98.5% | 100.0% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.60 | 40.0 | 3.19e-01 | 100.0% | 32.2% |
| 1ywhA01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.58 | 43.0 | 4.00e-01 | 100.0% | 63.0% |
| 2vqpA01 | 2.70.20.30 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain | 0.58 | 48.0 | 4.11e-01 | 100.0% | 86.7% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 42.0 | 3.49e-01 | 100.0% | 42.1% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 45.0 | 3.98e-01 | 98.5% | 57.1% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 43.0 | 3.33e-01 | 100.0% | 33.0% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.56 | 43.0 | 4.17e-01 | 92.3% | 72.7% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.56 | 47.0 | 4.14e-01 | 100.0% | 79.2% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.56 | 40.0 | 3.02e-01 | 76.9% | 30.5% |
| 6x1kA01 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 46.0 | 3.95e-01 | 98.5% | 100.0% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 48.0 | 3.81e-01 | 100.0% | 90.8% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.55 | 43.0 | 4.13e-01 | 89.2% | 83.3% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 44.0 | 3.69e-01 | 98.5% | 50.0% |
| 1xvsA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.54 | 45.0 | 3.70e-01 | 100.0% | 49.6% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 43.0 | 2.77e-01 | 100.0% | 17.1% |
| 4ag4A02 | 2.60.120.1190 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 3.12e-01 | 100.0% | 31.5% |
| 1kf6B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.53 | 45.0 | 3.95e-01 | 100.0% | 77.9% |
| 4r8tB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 42.0 | 4.15e-01 | 98.5% | 93.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 39.0 | 3.53e-01 | 100.0% | 58.5% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.51 | 43.0 | 3.60e-01 | 100.0% | 85.4% |
| 4geiA00 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 3.41e-01 | 100.0% | 86.8% |
| 4ll1C02 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.37e-01 | 98.5% | 95.0% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.50 | 43.0 | 3.64e-01 | 100.0% | 73.5% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.77 | 66.0 | 5.08e-01 | 100.0% | 43.6% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.77 | 60.0 | 5.77e-01 | 100.0% | 73.3% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 59.0 | 6.24e-01 | 100.0% | 94.8% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 60.0 | 6.18e-01 | 100.0% | 91.7% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.75 | 61.0 | 5.76e-01 | 100.0% | 73.8% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.72 | 59.0 | 5.41e-01 | 100.0% | 69.4% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.68 | 55.0 | 5.75e-01 | 100.0% | 100.0% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 53.0 | 5.53e-01 | 98.5% | 98.3% |
| 3632407 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 56.0 | 4.71e-01 | 100.0% | 72.6% |
| 4253385 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.65 | 40.0 | 4.01e-01 | 100.0% | 59.4% |
| 4001707 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.61 | 52.0 | 4.78e-01 | 95.4% | 75.3% |
| 5026566 | 2488.1.1.11 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SFM1-like | 0.61 | 48.0 | 3.46e-01 | 100.0% | 28.5% |
| 3414928 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.61 | 46.0 | 4.21e-01 | 100.0% | 60.2% |
| 3926687 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 51.0 | 4.21e-01 | 100.0% | 50.8% |
| 3787050 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.60 | 52.0 | 4.61e-01 | 98.5% | 67.4% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 45.0 | 4.56e-01 | 100.0% | 86.2% |
| 3287357 | 3115.3.1.0 ↗ | a+b two layers › GP2-like › P56 › P56 | 0.59 | 46.0 | 4.78e-01 | 98.5% | 100.0% |
| 3483062 | 221.1.1.116 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 | 0.56 | 49.0 | 4.07e-01 | 100.0% | 90.0% |
| 3929801 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.56 | 49.0 | 4.36e-01 | 100.0% | 84.2% |
| 3218957 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.56 | 49.0 | 4.09e-01 | 100.0% | 69.6% |
| 1549038 | 11.1.1.345 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FlaF_Ig-like | 0.56 | 49.0 | 3.93e-01 | 100.0% | 56.2% |
| 3223921 | 2484.1.1.259 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 | 0.56 | 46.0 | 4.21e-01 | 95.4% | 72.2% |
| 3967781 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 47.0 | 3.65e-01 | 100.0% | 42.5% |
| 3999001 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.55 | 47.0 | 4.03e-01 | 100.0% | 59.0% |
| 5044458 | 876.1.1.10 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 | 0.55 | 46.0 | 3.43e-01 | 100.0% | 97.4% |
| 3490255 | 11.1.4.114 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 | 0.55 | 40.0 | 3.57e-01 | 100.0% | 53.0% |
| 1291943 | 4065.1.1.3 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › Fungal_virus_P2_C | 0.54 | 45.0 | 2.77e-01 | 96.9% | 94.0% |
| 5047498 | 3662.1.1.4 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac | 0.54 | 39.0 | 3.26e-01 | 76.9% | 45.2% |
| 3577792 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.54 | 44.0 | 3.62e-01 | 100.0% | 49.2% |
| 4940890 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.54 | 36.0 | 2.99e-01 | 70.8% | 64.8% |
| 3382614 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 45.0 | 2.72e-01 | 100.0% | 20.0% |
| 3652660 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.53 | 48.0 | 3.23e-01 | 100.0% | 73.9% |
| 4284041 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.53 | 38.0 | 2.71e-01 | 75.4% | 69.7% |
| 3707877 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.53 | 46.0 | 3.48e-01 | 100.0% | 87.6% |
| 3408098 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.53 | 43.0 | 3.50e-01 | 100.0% | 82.7% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 43.0 | 3.92e-01 | 100.0% | 67.8% |
| 3722266 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 46.0 | 3.78e-01 | 100.0% | 90.4% |
| 3890589 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.53 | 46.0 | 3.52e-01 | 100.0% | 88.4% |
| 4607738 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.53 | 45.0 | 3.90e-01 | 100.0% | 62.7% |
| 3891134 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.53 | 45.0 | 3.55e-01 | 100.0% | 84.0% |
| 4055104 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 47.0 | 4.30e-01 | 100.0% | 88.2% |
| 3757469 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 35.0 | 3.30e-01 | 100.0% | 52.9% |
| 3813872 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.53 | 46.0 | 3.00e-01 | 100.0% | 98.7% |
| 4088630 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.52 | 38.0 | 2.58e-01 | 73.8% | 30.2% |
| 4872941 | 10.2.1.43 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C | 0.52 | 41.0 | 3.57e-01 | 95.4% | 52.9% |
| 3296651 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.52 | 41.0 | 3.50e-01 | 90.8% | 96.5% |
| 3347390 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 3.36e-01 | 100.0% | 55.9% |
| 5000210 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.52 | 45.0 | 3.83e-01 | 100.0% | 59.1% |
| 3483327 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.45e-01 | 98.5% | 49.3% |
| 5039465 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 45.0 | 3.91e-01 | 100.0% | 74.3% |
| 3990889 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 40.0 | 3.10e-01 | 96.9% | 34.7% |
| 3900025 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.51 | 45.0 | 4.47e-01 | 98.5% | 97.1% |
| 3512250 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.51 | 44.0 | 3.43e-01 | 100.0% | 74.7% |
| 3802001 | 207.1.1.174 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 | 0.51 | 43.0 | 2.61e-01 | 98.5% | 26.8% |
| 3408738 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 43.0 | 3.46e-01 | 100.0% | 88.1% |