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MK799832.1__QCW22838.1__X__00013

Bact-Vir

MK799832.1__QCW22838.1__X__00013

Identity

Accession:
MK799832 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-B05

TaxID: 2484637

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-49
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 75.0 7.22e-01 100.0% 92.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 72.0 6.72e-01 100.0% 91.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 69.0 5.12e-01 100.0% 46.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 69.0 6.23e-01 100.0% 84.4%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 69.0 6.24e-01 100.0% 75.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 68.0 6.81e-01 97.8% 100.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 65.0 6.03e-01 97.8% 100.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 65.0 5.64e-01 100.0% 81.3%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 5.25e-01 100.0% 87.1%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 4.96e-01 100.0% 51.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 55.0 5.44e-01 100.0% 96.1%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 52.0 4.91e-01 100.0% 74.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 49.0 4.59e-01 100.0% 76.7%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 39.0 2.94e-01 89.1% 28.6%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.55 47.0 4.58e-01 100.0% 88.5%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 44.0 3.80e-01 97.8% 81.2%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.20e-01 100.0% 81.1%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.67e-01 89.1% 95.3%
4a0fB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 44.0 2.99e-01 97.8% 71.0%
1xhcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 3.16e-01 100.0% 97.5%
3kd9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.87e-01 100.0% 46.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 74.0 6.95e-01 100.0% 85.5%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.82 74.0 4.91e-01 100.0% 30.6%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 73.0 6.67e-01 100.0% 100.0%
4280256 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.81 64.0 6.25e-01 100.0% 78.0%
4602101 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 72.0 6.43e-01 100.0% 90.8%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 73.0 6.13e-01 100.0% 69.3%
4056584 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 73.0 6.00e-01 100.0% 65.0%
4030603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 72.0 6.30e-01 100.0% 76.5%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 70.0 4.69e-01 97.8% 27.4%
3523046 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 72.0 5.85e-01 100.0% 61.2%
3778124 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 72.0 6.41e-01 100.0% 80.0%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.51e-01 100.0% 88.3%
3713613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 71.0 6.35e-01 100.0% 86.2%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 71.0 5.90e-01 100.0% 67.5%
3550579 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 71.0 6.72e-01 100.0% 96.4%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 70.0 6.21e-01 100.0% 89.6%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.79 70.0 5.12e-01 100.0% 57.5%
1140051 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 69.0 6.85e-01 100.0% 98.0%
3259044 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 69.0 6.57e-01 100.0% 94.5%
3578855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 68.0 5.64e-01 97.8% 66.3%
3592525 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 67.0 5.09e-01 97.8% 61.8%
137916 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.78 67.0 6.05e-01 100.0% 93.8%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.78 69.0 6.17e-01 100.0% 80.0%
3708644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 4.97e-01 100.0% 64.3%
3501560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 5.39e-01 100.0% 67.8%
3308545 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 61.0 4.15e-01 89.1% 30.0%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 65.0 5.62e-01 100.0% 70.7%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 66.0 5.41e-01 100.0% 69.4%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.93e-01 100.0% 85.0%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.72 63.0 4.91e-01 100.0% 46.0%
3862537 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.72 61.0 6.03e-01 97.8% 90.0%
3376597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.54e-01 87.0% 100.0%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.10e-01 100.0% 61.3%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.57e-01 100.0% 81.7%
3500448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.37e-01 100.0% 75.4%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.23e-01 100.0% 71.4%
3519861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.46e-01 100.0% 81.7%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.53e-01 100.0% 85.0%
3929784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.68e-01 100.0% 96.0%
3935101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.11e-01 100.0% 80.0%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.29e-01 100.0% 86.7%
540 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.64 53.0 5.27e-01 100.0% 93.8%
4956196 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.62 51.0 4.64e-01 100.0% 69.2%
4981485 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 38.0 3.80e-01 87.0% 66.0%
5038213 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.53 43.0 4.23e-01 97.8% 94.0%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.52 42.0 2.79e-01 97.8% 21.0%
D2 high residues 59-187
PDB
Domain cluster: rep: MK867354.2__QFG06455.1__SSCSM1_192__00192__D38-135