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MK799832.1__QCW23004.1__X__00180
Bact-VirMK799832.1__QCW23004.1__X__00180
Identity
- Accession:
- MK799832 ↗
- Kingdom:
- phage
Quality
89.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_S-B05
TaxID: 2484637
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 38.0 | 3.74e-01 | 100.0% | 50.0% |
| 3o6uC00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.63 | 44.0 | 3.33e-01 | 74.0% | 63.9% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.62 | 40.0 | 3.57e-01 | 70.0% | 45.9% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.59 | 50.0 | 3.85e-01 | 100.0% | 82.4% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.59 | 44.0 | 3.91e-01 | 100.0% | 56.2% |
| 4ou7A00 | 1.10.8.1180 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 49.0 | 4.46e-01 | 100.0% | 78.9% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.58 | 48.0 | 4.26e-01 | 100.0% | 71.6% |
| 6scjA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 47.0 | 2.75e-01 | 100.0% | 25.4% |
| 4bzaA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 42.0 | 3.75e-01 | 100.0% | 51.9% |
| 2gviA03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 30.0 | 3.65e-01 | 100.0% | 79.4% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 40.0 | 3.22e-01 | 76.0% | 84.0% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.56 | 48.0 | 3.57e-01 | 100.0% | 81.5% |
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.55 | 37.0 | 3.00e-01 | 72.0% | 36.5% |
| 1r6xA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 46.0 | 3.09e-01 | 100.0% | 64.8% |
| 3cr8C02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 45.0 | 3.09e-01 | 100.0% | 59.1% |
| 3gr3A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 42.0 | 2.80e-01 | 92.0% | 51.3% |
| 3enpA00 | 3.30.2380.10 | Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB | 0.53 | 44.0 | 3.11e-01 | 98.0% | 87.7% |
| 2epcA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 31.0 | 3.54e-01 | 100.0% | 75.8% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.52 | 40.0 | 3.64e-01 | 100.0% | 83.3% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.51 | 40.0 | 2.87e-01 | 90.0% | 95.2% |
| 2ahmG01 | 6.10.250.2820 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 45.0 | 3.61e-01 | 100.0% | 56.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965239 | 3121.1.1.3 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2 | 0.69 | 55.0 | 4.74e-01 | 100.0% | 55.0% |
| 4813923 | 4967.1.1.14 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb | 0.69 | 39.0 | 3.80e-01 | 78.0% | 51.9% |
| 3593164 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.68 | 58.0 | 4.11e-01 | 100.0% | 59.4% |
| 2503381 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.68 | 44.0 | 4.69e-01 | 100.0% | 76.7% |
| 3595202 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 56.0 | 3.63e-01 | 100.0% | 20.9% |
| 3866405 | 386.1.1.125 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_16 | 0.66 | 34.0 | 3.36e-01 | 98.0% | 43.6% |
| 3864004 | 386.1.1.133 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 | 0.65 | 33.0 | 3.27e-01 | 98.0% | 43.6% |
| 3187132 | 386.1.1.10 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › MAT1 | 0.64 | 44.0 | 4.11e-01 | 74.0% | 63.1% |
| 3930451 | 386.1.1.10 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › MAT1 | 0.62 | 43.0 | 4.09e-01 | 74.0% | 68.3% |
| 4934840 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 44.0 | 3.27e-01 | 78.0% | 51.2% |
| 3486562 | 386.1.1.242 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 | 0.60 | 33.0 | 3.09e-01 | 98.0% | 41.7% |
| 5057106 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.59 | 52.0 | 4.31e-01 | 100.0% | 57.8% |
| 3935744 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 31.0 | 3.03e-01 | 96.0% | 43.6% |
| 3411497 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.58 | 30.0 | 3.66e-01 | 96.0% | 76.7% |
| 4379866 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.58 | 42.0 | 3.95e-01 | 100.0% | 61.5% |
| 3431630 | 103.5.1.8 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF1677 | 0.57 | 46.0 | 4.11e-01 | 100.0% | 62.7% |
| 4943767 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.57 | 46.0 | 3.76e-01 | 100.0% | 67.3% |
| 3839914 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.57 | 41.0 | 3.90e-01 | 100.0% | 63.1% |
| 3330535 | 304.8.1.55 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_C | 0.57 | 46.0 | 4.10e-01 | 94.0% | 94.7% |
| 4404543 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 30.0 | 3.33e-01 | 96.0% | 60.0% |
| 3587273 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 40.0 | 3.89e-01 | 100.0% | 66.7% |
| None | — | 0.55 | 47.0 | 3.61e-01 | 100.0% | 85.5% | |
| 3596419 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.55 | 36.0 | 3.92e-01 | 82.0% | 85.0% |
| 3407017 | 130.1.1.2 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM | 0.55 | 42.0 | 4.42e-01 | 94.0% | 97.8% |
| 3029343 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.53 | 45.0 | 3.40e-01 | 100.0% | 77.4% |
| 4211419 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.53 | 45.0 | 3.51e-01 | 100.0% | 59.1% |
| 3450949 | 4207.1.2.63 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › DUF1677 | 0.52 | 37.0 | 2.93e-01 | 96.0% | 37.0% |
| 3658922 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.52 | 41.0 | 3.60e-01 | 100.0% | 56.5% |
| 4507907 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.51 | 44.0 | 3.74e-01 | 100.0% | 62.4% |
| 3782974 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.51 | 39.0 | 2.76e-01 | 84.0% | 40.0% |
| 3635936 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.51 | 39.0 | 3.51e-01 | 98.0% | 82.4% |
| 3593943 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.51 | 36.0 | 2.14e-01 | 82.0% | 17.5% |
| 4664382 | 101.1.2.293 ↗ | alpha arrays › HTH › HTH › winged helix domain › IncFII_repA | 0.50 | 37.0 | 2.49e-01 | 78.0% | 61.0% |
| 3250876 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.50 | 40.0 | 4.06e-01 | 100.0% | 96.0% |