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MK801725.1__QDF17612.1__SEA_YAGO84_81__00081

Bact-Vir

MK801725.1__QDF17612.1__SEA_YAGO84_81__00081

Identity

Accession:
MK801725 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sourvirus› Gordonia_phage_Yago84

TaxID: 2571254

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-84
PDB
Domain cluster: rep: ON191531.1__URG17458.1__Mbo2_088__00088__D20-99
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.76e-01 100.0% 92.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.67 50.0 5.37e-01 89.3% 95.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.96e-01 88.0% 84.6%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.97e-01 92.0% 78.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.29e-01 97.3% 84.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.66 58.0 5.18e-01 100.0% 70.2%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.62 56.0 4.64e-01 100.0% 59.8%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.62e-01 100.0% 72.8%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.60 49.0 3.61e-01 96.0% 33.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.83e-01 100.0% 93.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.81e-01 97.3% 95.8%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.58 39.0 2.59e-01 70.7% 56.6%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.22e-01 92.0% 80.6%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.09e-01 94.7% 94.0%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 39.0 2.80e-01 74.7% 90.6%
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.55 44.0 4.53e-01 100.0% 93.0%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 45.0 3.61e-01 89.3% 100.0%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.94e-01 92.0% 76.6%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.54 34.0 4.09e-01 80.0% 100.0%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.54 39.0 4.29e-01 93.3% 96.7%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.75e-01 90.7% 38.5%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.67e-01 96.0% 97.9%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.47e-01 92.0% 81.7%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.26e-01 85.3% 44.9%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.52e-01 92.0% 93.9%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 45.0 4.18e-01 96.0% 94.7%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.42e-01 90.7% 84.1%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 3.34e-01 81.3% 97.4%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.50 45.0 3.99e-01 100.0% 87.2%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 41.0 3.09e-01 93.3% 47.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4264671 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 63.0 6.23e-01 100.0% 80.0%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.74 61.0 5.77e-01 98.7% 74.4%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.73 55.0 5.21e-01 100.0% 67.8%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 62.0 5.56e-01 100.0% 70.0%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 58.0 5.87e-01 100.0% 88.0%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.71 60.0 5.78e-01 98.7% 81.2%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 65.0 6.35e-01 100.0% 97.5%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.71 59.0 6.14e-01 100.0% 98.6%
3959770 4.31.1.0 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.70 57.0 5.32e-01 97.3% 72.2%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.70 64.0 5.26e-01 100.0% 73.1%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 59.0 5.58e-01 98.7% 76.7%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 64.0 6.26e-01 100.0% 95.0%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 59.0 5.49e-01 100.0% 73.7%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.70 59.0 5.66e-01 98.7% 81.2%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.69 63.0 5.22e-01 100.0% 73.1%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 60.0 5.52e-01 100.0% 74.7%
4209798 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.69 62.0 5.98e-01 100.0% 92.9%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 59.0 5.39e-01 100.0% 71.0%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 55.0 4.94e-01 100.0% 62.9%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 59.0 5.19e-01 98.7% 64.5%
4358168 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 60.0 5.28e-01 100.0% 66.4%
5058724 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.68 61.0 5.15e-01 100.0% 75.2%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.58e-01 98.7% 83.5%
147797 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 49.0 5.15e-01 92.0% 88.2%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 48.0 5.18e-01 98.7% 100.0%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.38e-01 94.7% 100.0%
4272564 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.65 55.0 4.88e-01 98.7% 65.7%
4283343 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 58.0 5.76e-01 100.0% 93.8%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.54e-01 94.7% 97.1%
3575581 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 54.0 4.19e-01 100.0% 42.4%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 54.0 4.82e-01 100.0% 66.7%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.83e-01 100.0% 64.5%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.37e-01 100.0% 85.9%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.75e-01 98.7% 100.0%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 55.0 5.41e-01 100.0% 90.0%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.63 53.0 5.11e-01 97.3% 83.5%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 5.11e-01 98.7% 98.4%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 51.0 5.20e-01 100.0% 93.3%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 46.0 4.61e-01 100.0% 80.0%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.62 53.0 4.16e-01 100.0% 44.4%
3608562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.28e-01 98.7% 90.6%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 53.0 4.74e-01 96.0% 70.5%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 46.0 3.52e-01 93.3% 33.9%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.60 47.0 4.67e-01 100.0% 82.5%
3631313 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.60 52.0 3.94e-01 100.0% 45.3%
3394789 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.53e-01 100.0% 65.5%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 45.0 4.61e-01 100.0% 87.8%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 46.0 4.78e-01 96.0% 95.7%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 3.83e-01 98.7% 45.3%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.13e-01 100.0% 56.0%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.58 49.0 4.03e-01 100.0% 49.7%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.58 43.0 4.49e-01 93.3% 87.1%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.43e-01 96.0% 71.0%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.61e-01 100.0% 82.4%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 52.0 4.72e-01 100.0% 87.0%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.58 44.0 4.58e-01 93.3% 90.0%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 47.0 4.79e-01 94.7% 90.7%
3642926 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 51.0 3.82e-01 100.0% 42.2%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.14e-01 100.0% 59.2%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.57 51.0 4.38e-01 100.0% 78.3%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.56 47.0 3.92e-01 100.0% 51.0%
4622062 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 3.44e-01 100.0% 41.7%
4581369 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.55 47.0 4.32e-01 100.0% 93.3%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.68e-01 100.0% 90.4%
5043905 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.55 40.0 2.92e-01 100.0% 26.2%
4955607 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.55 39.0 2.92e-01 100.0% 27.4%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.54 45.0 4.56e-01 100.0% 94.7%
2099294 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 44.0 3.67e-01 96.0% 97.9%
3263467 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 42.0 4.15e-01 94.7% 81.2%
3992333 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 45.0 2.98e-01 93.3% 26.6%
3259968 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.52 38.0 3.72e-01 78.7% 80.0%
138901 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.52 40.0 3.28e-01 85.3% 45.3%
4037095 1.1.5.36 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.51 42.0 3.33e-01 92.0% 80.0%
4318553 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.50 44.0 2.98e-01 98.7% 66.4%