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MK804891.1__QDB73910.1__2D05_079__00079

Bact-Vir

MK804891.1__QDB73910.1__2D05_079__00079

Identity

Accession:
MK804891 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-161
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xbsA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.72 43.0 4.96e-01 100.0% 82.1%
5u89A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.68 44.0 4.46e-01 76.6% 67.4%
6vhvA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.66 43.0 4.38e-01 76.6% 66.7%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 4.46e-01 76.6% 71.0%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.64 43.0 4.34e-01 76.6% 67.7%
3w9iD03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.63 47.0 4.61e-01 78.7% 73.8%
4aybL00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.62 38.0 3.86e-01 86.2% 62.6%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 36.0 4.02e-01 77.7% 74.3%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.61 37.0 3.48e-01 86.2% 49.6%
1nnnA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.61 43.0 3.99e-01 76.6% 57.9%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.60 37.0 3.48e-01 86.2% 50.4%
3e0mC01 3.30.1060.10 Alpha Beta › 2-Layer Sandwich › Peptide Methionine Sulfoxide Reductase; Chain A › Peptide methionine sulphoxide reductase MsrA 0.60 53.0 4.47e-01 100.0% 72.0%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.14e-01 76.6% 69.4%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.59 44.0 4.30e-01 77.7% 75.2%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 43.0 4.20e-01 76.6% 73.5%
3e7wA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.58 42.0 4.01e-01 76.6% 64.0%
1f5aA01 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.58 43.0 4.18e-01 100.0% 70.1%
8d8lF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 40.0 3.68e-01 76.6% 60.2%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 45.0 4.53e-01 100.0% 89.4%
1fnoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 43.0 3.12e-01 89.4% 99.0%
1ac5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 44.0 2.85e-01 93.6% 63.1%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.43e-01 76.6% 73.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946546 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.97 92.0 9.21e-01 98.9% 96.8%
3943566 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.96 81.0 8.51e-01 98.9% 96.5%
4957577 327.20.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Baseplate structural protein gp6 C-terminal domain I › Baseplate structural protein gp6 C-terminal domain I 0.86 55.0 6.63e-01 76.6% 93.8%
4990691 304.59.1.1 a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 0.73 47.0 4.88e-01 77.7% 68.9%
5024788 304.59.1.1 a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 0.72 47.0 4.94e-01 77.7% 72.9%
3954086 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.65 43.0 4.14e-01 76.6% 58.2%
3983684 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.65 47.0 4.86e-01 76.6% 85.6%
4633863 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.64 47.0 4.41e-01 76.6% 66.1%
3971521 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.64 45.0 4.40e-01 77.7% 66.7%
1312370 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.64 47.0 4.38e-01 76.6% 67.5%
5081173 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 45.0 4.20e-01 76.6% 77.4%
3281429 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 41.0 4.23e-01 77.7% 75.6%
4016469 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 43.0 3.91e-01 76.6% 74.4%
2596971 304.4.1.13 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › SOR 0.58 42.0 3.58e-01 76.6% 74.1%
4975902 327.3.1.0 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.58 42.0 4.07e-01 76.6% 86.7%
3602899 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.56 38.0 3.83e-01 86.2% 68.4%
3209163 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.55 50.0 4.21e-01 100.0% 88.4%
4185835 327.13.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.55 49.0 4.43e-01 96.8% 73.6%
5049052 304.3.1.4 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D 0.55 40.0 4.07e-01 77.7% 80.0%
4487943 304.17.1.1 a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG 0.54 42.0 3.78e-01 100.0% 60.8%
3413240 3115.1.1.3 a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.53 38.0 3.32e-01 77.7% 96.9%
4947403 327.3.1.1 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.53 46.0 3.94e-01 98.9% 85.5%
4953444 304.8.1.111 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MCR_D 0.51 37.0 3.32e-01 76.6% 55.1%
4413532 304.3.1.4 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D 0.51 37.0 3.21e-01 77.7% 61.3%
D2 high residues 167-264
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b66A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.63 47.0 4.23e-01 79.6% 88.4%
1vz8A02 3.10.20.340 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain 0.59 53.0 5.12e-01 100.0% 87.5%
1vw5B00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.59 42.0 4.04e-01 73.5% 92.0%
3t5sA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.56 42.0 4.28e-01 80.6% 100.0%
2wkbA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.55 38.0 3.82e-01 70.4% 100.0%
2zy2A02 1.10.20.110 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.55 42.0 3.76e-01 83.7% 93.9%
4oj3B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 44.0 4.51e-01 93.9% 92.6%
3trgA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 4.48e-01 93.9% 92.6%
4dh4A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 42.0 4.06e-01 86.7% 93.9%
4lhpF00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 42.0 3.89e-01 88.8% 89.2%
4ii2A02 3.40.50.12550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 0.52 41.0 3.29e-01 87.8% 82.5%
1xkoB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.52 42.0 3.65e-01 89.8% 96.9%
2hyxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 3.15e-01 82.7% 61.7%
1r5pB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 36.0 3.71e-01 74.5% 97.8%
3d3zA00 3.90.730.10 Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like 0.50 41.0 3.15e-01 90.8% 83.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946544 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.98 96.0 9.29e-01 100.0% 95.2%
3943567 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.83 76.0 7.58e-01 98.0% 98.0%
4957578 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.83 70.0 7.25e-01 100.0% 97.8%
4565831 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.80 67.0 7.03e-01 100.0% 98.9%
5004557 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.79 72.0 6.95e-01 100.0% 98.2%
5002740 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.77 72.0 6.90e-01 100.0% 96.4%
3977755 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.73 59.0 6.21e-01 100.0% 100.0%
3395489 229.1.1.7 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.69 55.0 5.79e-01 100.0% 92.2%
3282403 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.68 51.0 3.28e-01 79.6% 77.4%
3489796 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.60 54.0 5.34e-01 100.0% 97.1%
3279157 315.1.1.0 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.58 48.0 4.44e-01 88.8% 95.2%
3944079 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.51e-01 74.5% 96.2%
3725585 315.1.1.0 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.58 46.0 3.85e-01 86.7% 77.0%
5073964 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.57 46.0 4.75e-01 99.0% 95.6%
3596134 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 46.0 3.53e-01 87.8% 39.1%
5047688 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.57 45.0 4.72e-01 99.0% 96.7%
3710004 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 46.0 4.22e-01 88.8% 70.0%
3740395 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.56 50.0 4.90e-01 100.0% 94.3%
2320168 315.1.1.1 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF 0.55 42.0 4.05e-01 83.7% 90.4%
3224329 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.70e-01 76.5% 72.0%
4030726 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.55 44.0 3.19e-01 87.8% 65.5%
3250093 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.54 42.0 3.16e-01 83.7% 74.1%
5061460 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.54 44.0 4.59e-01 93.9% 98.9%
4085827 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.53 43.0 4.51e-01 92.9% 97.8%
5060856 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.53 45.0 4.08e-01 93.9% 94.8%
4024866 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 34.0 2.69e-01 82.7% 28.3%
4993992 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.51 42.0 4.17e-01 94.9% 89.0%
3387871 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.50 34.0 3.29e-01 85.7% 59.1%
D3 medium residues 6-63
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hw2A00 3.20.170.40 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Rifampin ADP-ribosyltransferase domain 0.69 32.0 2.41e-01 100.0% 18.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4514735 1049.2.1.4 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.65 55.0 3.92e-01 100.0% 31.1%
3511714 243.3.1.53 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN 0.65 34.0 2.73e-01 91.4% 28.6%
3299295 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 28.0 2.64e-01 100.0% 37.3%
3789224 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.50 38.0 2.72e-01 89.7% 96.3%