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MK804892.1__QDJ96119.1__4D05_006__00006

Bact-Vir

MK804892.1__QDJ96119.1__4D05_006__00006

Identity

Accession:
MK804892 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kunmingvirus› Aeromonas_phage_4_D05

TaxID: 2588099

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-65
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5oomK00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.53 36.0 2.69e-01 71.7% 25.4%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 37.0 2.90e-01 73.3% 79.7%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 28.0 2.31e-01 70.0% 28.8%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.67e-01 98.3% 70.3%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.06e-01 75.0% 79.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174620 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 55.0 3.49e-01 100.0% 46.5%
3946272 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 45.0 3.32e-01 76.7% 76.4%
3289450 327.5.1.6 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like 0.61 44.0 3.55e-01 76.7% 80.8%
3829835 7516.1.1.35 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch 0.60 47.0 3.01e-01 88.3% 30.8%
3242826 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 39.0 2.64e-01 70.0% 60.4%
3786625 109.4.1.165 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dsl1_C 0.58 42.0 2.46e-01 78.3% 20.4%
3950469 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.55 44.0 2.97e-01 98.3% 88.1%
3582833 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 37.0 3.13e-01 70.0% 90.9%
4025728 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 47.0 3.85e-01 100.0% 65.2%
3602838 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.54 45.0 3.55e-01 100.0% 82.9%
3269999 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 37.0 3.30e-01 73.3% 87.8%
1946138 2490.2.1.1 ↗ a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 0.53 36.0 2.59e-01 71.7% 22.2%
3383958 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 42.0 2.83e-01 100.0% 62.3%
3885554 2490.2.1.1 ↗ a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 0.52 35.0 2.63e-01 71.7% 25.1%
3326893 2490.2.1.1 ↗ a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 0.52 35.0 2.61e-01 71.7% 25.0%
4945266 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 36.0 2.89e-01 75.0% 36.3%
4996180 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 36.0 2.88e-01 75.0% 37.8%
5058885 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 44.0 3.29e-01 98.3% 90.0%
3489929 2490.2.1.1 ↗ a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal protein L13 and L16-A › Ribosomal protein L13 and L16-A › Ribosomal_L13 0.51 35.0 2.69e-01 71.7% 29.0%
1007200 3105.1.1.1 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase 0.51 36.0 2.75e-01 75.0% 33.8%
4460580 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.50 35.0 2.35e-01 73.3% 21.1%
D2 medium residues 70-128
PDB
Domain cluster: rep: NC_052660.1__YP_009986652.1__JR325_gp173__00276__D78-150
D3 medium residues 161-266
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 47.0 6.03e-01 75.5% 95.2%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 5.71e-01 70.8% 94.8%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.78 54.0 5.54e-01 70.8% 92.1%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.76 49.0 5.18e-01 70.8% 72.6%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 49.0 4.80e-01 76.4% 59.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 41.0 4.99e-01 70.8% 92.8%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 43.0 4.93e-01 89.6% 89.7%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 41.0 3.73e-01 70.8% 62.2%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 42.0 3.89e-01 71.7% 63.6%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 41.0 3.77e-01 70.8% 61.2%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 41.0 3.68e-01 71.7% 62.5%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.99e-01 84.9% 81.2%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 33.0 3.13e-01 72.6% 48.5%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.54 36.0 3.57e-01 76.4% 64.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.80 48.0 6.13e-01 72.6% 100.0%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.76 46.0 4.73e-01 70.8% 63.1%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.73 49.0 5.77e-01 79.2% 97.3%
3423907 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.72 52.0 4.47e-01 75.5% 88.5%
3341337 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.71 52.0 4.37e-01 75.5% 91.8%
4929550 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.69 42.0 5.03e-01 70.8% 91.4%
3599975 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.67 51.0 3.96e-01 80.2% 95.9%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.66 41.0 4.77e-01 71.7% 92.9%
3192494 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.65 46.0 3.05e-01 71.7% 35.3%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 42.0 4.88e-01 72.6% 93.3%
3487453 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.64 47.0 4.46e-01 82.1% 64.0%
4882265 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.63 46.0 4.09e-01 80.2% 54.1%
3297966 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.62 55.0 5.30e-01 96.2% 93.3%
3811908 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 43.0 3.89e-01 71.7% 65.7%
3677761 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 43.0 4.04e-01 71.7% 68.8%
5025236 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 42.0 3.98e-01 71.7% 67.4%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.88e-01 92.5% 95.8%
3232054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.89e-01 93.4% 95.0%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 43.0 4.28e-01 91.5% 85.5%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 49.0 4.77e-01 99.1% 90.4%