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MK813940.1__QFG15346.1__4L372X_034__00034
Bact-VirMK813940.1__QFG15346.1__4L372X_034__00034
Identity
- Accession:
- MK813940 ↗
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-68
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oagB02 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.68 | 56.0 | 4.15e-01 | 95.5% | 81.7% |
| 4rcmB00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.66 | 56.0 | 4.37e-01 | 100.0% | 61.6% |
| 2egvA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.66 | 51.0 | 5.12e-01 | 86.4% | 92.4% |
| 3netB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 49.0 | 3.28e-01 | 100.0% | 85.8% |
| 1bleA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.56 | 41.0 | 3.12e-01 | 78.8% | 42.2% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 43.0 | 3.60e-01 | 100.0% | 48.2% |
| 2w00A01 | 3.90.1570.50 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.56 | 49.0 | 3.64e-01 | 100.0% | 57.9% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 47.0 | 3.74e-01 | 100.0% | 77.3% |
| 2d0oB00 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.55 | 46.0 | 4.01e-01 | 100.0% | 59.3% |
| 3eoeD01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.55 | 42.0 | 3.40e-01 | 86.4% | 69.3% |
| 3m7vA02 | 3.30.70.1250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phosphopentomutase | 0.55 | 47.0 | 3.91e-01 | 100.0% | 86.8% |
| 5ha4A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 43.0 | 3.44e-01 | 87.9% | 45.6% |
| 3ttcA04 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 35.0 | 2.47e-01 | 92.4% | 18.4% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 44.0 | 3.57e-01 | 98.5% | 61.2% |
| 1s1fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 43.0 | 2.67e-01 | 92.4% | 77.1% |
| 3eyeA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.52 | 44.0 | 3.48e-01 | 100.0% | 55.6% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 36.0 | 3.38e-01 | 75.8% | 72.6% |
| 1yxsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 3.38e-01 | 80.3% | 82.6% |
| 2o3gA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 36.0 | 3.45e-01 | 75.8% | 82.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4452640 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.71 | 56.0 | 5.01e-01 | 87.9% | 95.8% |
| 4363388 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.65 | 48.0 | 4.29e-01 | 81.8% | 76.8% |
| 4930189 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 47.0 | 4.90e-01 | 90.9% | 93.3% |
| 3234365 | 2002.1.1.189 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5_TIM | 0.59 | 45.0 | 3.02e-01 | 87.9% | 92.0% |
| 2755323 | 219.1.1.23 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB | 0.57 | 48.0 | 3.29e-01 | 97.0% | 84.1% |
| 3958547 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.55 | 44.0 | 4.44e-01 | 92.4% | 92.3% |
| 5012331 | 7518.1.1.7 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DacZ_T | 0.55 | 42.0 | 3.78e-01 | 86.4% | 94.0% |
| 3397676 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.55 | 41.0 | 3.21e-01 | 81.8% | 97.3% |
| 3325528 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 45.0 | 3.46e-01 | 100.0% | 89.4% |
| 4379983 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.53 | 40.0 | 3.82e-01 | 92.4% | 70.0% |
| 3847773 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.51 | 36.0 | 3.48e-01 | 75.8% | 84.0% |