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MK813940.1__QFG15359.1__4L372X_047__00047
Bact-VirMK813940.1__QFG15359.1__4L372X_047__00047
Identity
- Accession:
- MK813940 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-112
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF28031.1 best | ParC-like | 30.2 | 3.90e-07 | 80.2% | 57.0% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n7zB03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.64 | 36.0 | 3.39e-01 | 80.2% | 45.3% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 44.0 | 3.97e-01 | 76.5% | 59.5% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 47.0 | 3.44e-01 | 88.9% | 30.4% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.60 | 49.0 | 4.25e-01 | 87.7% | 63.9% |
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 43.0 | 4.00e-01 | 76.5% | 75.0% |
| 2qm1A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 46.0 | 3.69e-01 | 86.4% | 83.8% |
| 1z05A03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 46.0 | 3.71e-01 | 87.7% | 82.9% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 46.0 | 3.35e-01 | 85.2% | 82.9% |
| 1atrA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 48.0 | 4.69e-01 | 92.6% | 85.4% |
| 3cwxA00 | 3.40.1420.20 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD | 0.57 | 33.0 | 2.89e-01 | 71.6% | 35.2% |
| 1rpyB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 37.0 | 3.65e-01 | 72.8% | 60.5% |
| 3d2fA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 47.0 | 4.55e-01 | 91.4% | 82.8% |
| 3ibsA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.57 | 46.0 | 3.48e-01 | 88.9% | 83.0% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 45.0 | 3.66e-01 | 88.9% | 56.9% |
| 1sz2A02 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.56 | 46.0 | 3.57e-01 | 93.8% | 75.5% |
| 1okjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 45.0 | 3.92e-01 | 88.9% | 62.2% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 31.0 | 3.37e-01 | 72.8% | 61.2% |
| 2ap1A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 44.0 | 3.58e-01 | 87.7% | 84.9% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.56 | 43.0 | 3.80e-01 | 86.4% | 56.2% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 29.0 | 3.50e-01 | 74.1% | 84.4% |
| 3ttcA03 | 3.30.420.360 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 42.0 | 3.74e-01 | 87.7% | 61.2% |
| 3j7yD01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 28.0 | 2.65e-01 | 71.6% | 37.7% |
| 7r8iA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 40.0 | 3.08e-01 | 88.9% | 38.2% |
| 1iruI00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 38.0 | 2.82e-01 | 81.5% | 34.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972955 | 4263.2.1.2 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › DUF6482 | 0.72 | 49.0 | 5.23e-01 | 74.1% | 82.9% |
| 4133040 | 2484.2.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N | 0.68 | 44.0 | 4.52e-01 | 76.5% | 67.5% |
| 4047317 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.66 | 48.0 | 4.29e-01 | 76.5% | 54.9% |
| 4276145 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.65 | 47.0 | 4.31e-01 | 76.5% | 56.9% |
| 4169409 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.65 | 47.0 | 4.22e-01 | 76.5% | 54.4% |
| 3518268 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 46.0 | 3.89e-01 | 80.2% | 44.4% |
| 4034394 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 49.0 | 4.45e-01 | 86.4% | 60.0% |
| 4484723 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.64 | 46.0 | 4.29e-01 | 76.5% | 59.6% |
| 4973193 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.63 | 49.0 | 4.84e-01 | 96.3% | 80.0% |
| 3323400 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 49.0 | 4.28e-01 | 84.0% | 56.7% |
| 154344 | 220.1.1.61 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 | 0.62 | 45.0 | 4.09e-01 | 76.5% | 60.6% |
| 3232262 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.62 | 34.0 | 3.05e-01 | 77.8% | 38.2% |
| 1141835 | 220.1.1.17 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 | 0.61 | 39.0 | 3.43e-01 | 72.8% | 43.0% |
| 3219961 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 45.0 | 3.86e-01 | 88.9% | 50.4% |
| 3240324 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.59 | 49.0 | 3.84e-01 | 92.6% | 54.3% |
| 4972053 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.58 | 49.0 | 3.28e-01 | 98.8% | 85.1% |
| 3935202 | 220.1.1.161 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 | 0.58 | 42.0 | 3.77e-01 | 79.0% | 55.0% |
| 3261915 | 2484.1.1.31 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase | 0.57 | 47.0 | 3.47e-01 | 92.6% | 70.2% |
| 3208509 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 46.0 | 3.23e-01 | 88.9% | 83.0% |
| 5026433 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 41.0 | 3.85e-01 | 76.5% | 68.0% |
| 3239102 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 45.0 | 3.63e-01 | 87.7% | 47.9% |
| 4514389 | 2484.1.1.31 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase | 0.56 | 45.0 | 3.43e-01 | 88.9% | 74.1% |
| 5061935 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.56 | 47.0 | 3.21e-01 | 98.8% | 87.0% |
| 4990974 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.56 | 30.0 | 2.97e-01 | 74.1% | 45.9% |
| 3709132 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 3.50e-01 | 80.2% | 49.2% |
| 3934739 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 47.0 | 4.46e-01 | 97.5% | 95.0% |
| 3382554 | 2484.1.1.60 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G | 0.54 | 43.0 | 4.03e-01 | 92.6% | 67.6% |
| 3514373 | 2484.1.1.80 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C | 0.54 | 42.0 | 3.66e-01 | 86.4% | 56.9% |
| 4675577 | 7515.1.1.5 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C | 0.53 | 45.0 | 2.83e-01 | 98.8% | 21.8% |
| 3386799 | 246.1.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase | 0.53 | 37.0 | 2.72e-01 | 92.6% | 26.1% |
| 3956313 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.52 | 39.0 | 3.44e-01 | 81.5% | 90.4% |
| 3936092 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 43.0 | 3.07e-01 | 93.8% | 47.9% |
| 5050648 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.51 | 40.0 | 3.54e-01 | 85.2% | 59.2% |
| 3576228 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.51 | 36.0 | 3.47e-01 | 91.4% | 65.2% |
| 3501579 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.50 | 31.0 | 3.59e-01 | 87.7% | 92.7% |