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MK813940.1__QFG15369.1__4L372X_057__00057

Bact-Vir

MK813940.1__QFG15369.1__4L372X_057__00057

Identity

Accession:
MK813940 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aeromonas_phage_4_L372X

TaxID: 2588519

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.90 74.0 5.59e-01 88.9% 40.5%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.88 69.0 4.88e-01 85.2% 29.8%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.81 66.0 5.84e-01 96.3% 62.3%
2gwgA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.80 46.0 2.74e-01 74.1% 9.5%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.79 62.0 4.12e-01 88.9% 22.9%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 59.0 5.83e-01 85.2% 78.9%
3ismC01 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.74 57.0 4.10e-01 83.3% 29.9%
1sxjB03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.72 45.0 3.68e-01 75.9% 37.0%
4ie5A02 1.20.58.1470 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain 0.72 59.0 4.44e-01 96.3% 36.6%
3bvoB01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.70 48.0 3.96e-01 79.6% 39.8%
4j6oA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 44.0 2.80e-01 77.8% 26.4%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 46.0 2.89e-01 100.0% 59.2%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 39.0 3.12e-01 81.5% 52.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3930816 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.94 65.0 3.98e-01 74.1% 14.2%
3872599 109.4.1.1472 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N 0.92 79.0 4.38e-01 92.6% 8.1%
3774606 109.4.1.2221 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2 0.91 83.0 4.54e-01 100.0% 7.6%
4202292 570.1.1.1 ↗ alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.89 80.0 5.19e-01 100.0% 24.7%
3214189 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.85 77.0 6.06e-01 100.0% 50.5%
4660205 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.85 75.0 5.59e-01 100.0% 40.0%
4026047 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.84 68.0 5.75e-01 90.7% 55.3%
4459730 4990.1.1.1 ↗ alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap 0.83 71.0 4.44e-01 94.4% 20.0%
3223457 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.82 63.0 3.91e-01 83.3% 23.9%
3270696 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.81 74.0 5.84e-01 100.0% 60.0%
3839497 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.79 65.0 5.64e-01 100.0% 58.8%
3518386 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.77 57.0 5.11e-01 83.3% 57.3%
3679700 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.77 53.0 4.12e-01 74.1% 33.9%
4387547 7013.1.1.1 ↗ alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 0.74 65.0 4.48e-01 100.0% 31.6%
4278352 2004.1.1.88 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.74 58.0 3.77e-01 87.0% 52.9%
3234685 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.70 60.0 4.75e-01 100.0% 45.8%
3218052 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.66 56.0 4.42e-01 100.0% 43.3%
3356764 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.59 44.0 3.43e-01 87.0% 51.4%
3934503 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.52 37.0 3.79e-01 81.5% 88.0%