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MK813940.1__QFG15370.1__4L372X_058__00058

Bact-Vir

MK813940.1__QFG15370.1__4L372X_058__00058

Identity

Accession:
MK813940 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-47
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.79 68.0 6.18e-01 97.8% 83.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 5.63e-01 93.3% 68.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 63.0 5.37e-01 95.6% 61.6%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 5.42e-01 100.0% 64.1%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.74 64.0 4.17e-01 100.0% 28.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 5.55e-01 100.0% 63.8%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.74 61.0 4.53e-01 95.6% 47.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 5.68e-01 97.8% 76.7%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 4.54e-01 100.0% 39.4%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.68e-01 100.0% 80.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.50e-01 100.0% 74.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 5.32e-01 100.0% 82.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 4.75e-01 97.8% 50.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.41e-01 93.3% 84.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.36e-01 100.0% 75.8%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 4.96e-01 100.0% 67.5%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 4.52e-01 100.0% 53.6%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 4.34e-01 100.0% 41.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 53.0 5.30e-01 84.4% 91.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 5.64e-01 100.0% 83.9%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.00e-01 95.6% 66.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.05e-01 100.0% 68.8%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 4.07e-01 88.9% 47.8%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 4.70e-01 97.8% 59.0%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 49.0 4.60e-01 91.1% 64.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.08e-01 88.9% 93.8%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 57.0 3.64e-01 100.0% 26.6%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 53.0 3.58e-01 100.0% 77.5%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.65 52.0 4.20e-01 95.6% 49.0%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 4.81e-01 91.1% 73.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 3.72e-01 88.9% 42.7%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 51.0 3.69e-01 100.0% 72.4%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 48.0 4.01e-01 97.8% 64.5%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 3.73e-01 91.1% 82.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 3.72e-01 100.0% 53.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.48e-01 97.8% 52.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.05e-01 97.8% 74.2%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.56 42.0 2.87e-01 86.7% 20.5%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.55 42.0 3.16e-01 91.1% 33.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.10e-01 93.3% 42.7%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.52 43.0 3.04e-01 100.0% 72.3%
2qpwA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.52 40.0 3.10e-01 95.6% 87.3%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 42.0 3.16e-01 100.0% 48.1%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.52 40.0 3.08e-01 93.3% 36.9%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.51 36.0 2.75e-01 80.0% 45.9%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.33e-01 100.0% 75.2%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.82 74.0 6.46e-01 100.0% 73.8%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 71.0 6.17e-01 100.0% 72.9%
3673944 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.81 71.0 4.89e-01 100.0% 41.6%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 71.0 4.19e-01 100.0% 15.1%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.80 72.0 6.34e-01 100.0% 75.4%
3821778 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 69.0 6.75e-01 100.0% 100.0%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.39e-01 100.0% 85.0%
3576438 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 67.0 5.32e-01 95.6% 54.4%
3497234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 62.0 4.23e-01 88.9% 33.3%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.79 64.0 5.30e-01 91.1% 67.5%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 69.0 5.73e-01 100.0% 81.2%
4280097 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 67.0 6.15e-01 100.0% 73.3%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 69.0 5.60e-01 100.0% 77.6%
4656461 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 69.0 6.26e-01 100.0% 78.3%
3839955 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.77 58.0 5.45e-01 91.1% 67.3%
5002601 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.77 67.0 6.17e-01 100.0% 83.1%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.76 65.0 5.99e-01 97.8% 81.7%
3251414 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 67.0 5.00e-01 100.0% 61.8%
5064515 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 57.0 5.21e-01 91.1% 61.7%
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.76 62.0 5.86e-01 93.3% 87.3%
3240406 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.75 66.0 4.89e-01 100.0% 42.6%
3765289 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 63.0 5.04e-01 95.6% 51.1%
4002498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 5.14e-01 100.0% 49.5%
3616243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 62.0 5.84e-01 93.3% 81.8%
3996278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 64.0 4.71e-01 97.8% 37.5%
3357709 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 64.0 5.28e-01 100.0% 68.2%
3484822 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.75 65.0 5.40e-01 100.0% 63.7%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 64.0 5.62e-01 100.0% 75.4%
5025364 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 66.0 5.58e-01 100.0% 70.7%
3492757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 64.0 5.55e-01 97.8% 81.4%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.74 66.0 5.98e-01 100.0% 83.3%
3933131 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 63.0 4.61e-01 95.6% 60.8%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.74 62.0 5.26e-01 100.0% 70.0%
3541241 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.74 58.0 5.36e-01 88.9% 75.0%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.71e-01 100.0% 73.8%
5037849 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 62.0 4.61e-01 100.0% 42.4%
3601070 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.41e-01 93.3% 89.2%
3668886 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 63.0 4.56e-01 100.0% 55.4%
4629022 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.74 58.0 5.09e-01 88.9% 64.3%
3920666 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 63.0 5.10e-01 100.0% 53.3%
4317035 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 63.0 5.20e-01 100.0% 58.8%
3933047 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.73 64.0 4.37e-01 100.0% 70.6%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.44e-01 100.0% 74.3%
3224788 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.73 62.0 4.87e-01 100.0% 55.0%
5033600 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.33e-01 100.0% 93.9%
3520654 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.72 62.0 4.34e-01 100.0% 64.0%
5054196 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.72 60.0 4.18e-01 95.6% 32.0%
3852545 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.48e-01 95.6% 78.3%
3354387 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.71 60.0 4.92e-01 97.8% 82.4%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.71 62.0 4.33e-01 100.0% 64.7%
3967347 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 62.0 5.24e-01 100.0% 77.3%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 4.92e-01 100.0% 70.0%
1391581 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.71 59.0 4.74e-01 97.8% 49.5%
3595833 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 61.0 4.84e-01 100.0% 64.2%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.45e-01 100.0% 81.7%
3407854 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 61.0 4.82e-01 100.0% 50.5%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.70 60.0 4.24e-01 100.0% 33.8%
3517728 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 59.0 5.19e-01 100.0% 68.6%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.69 58.0 5.38e-01 100.0% 78.3%
3884661 4.1.1.382 beta barrels › SH3 › SH3 › SH3 › PF31078 0.68 55.0 4.28e-01 95.6% 59.1%
5037772 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.68 56.0 4.24e-01 95.6% 43.4%
3620554 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.40e-01 93.3% 47.4%
4947175 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.68 56.0 4.53e-01 95.6% 52.2%
3961612 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.68 60.0 3.83e-01 100.0% 28.9%
3270324 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 51.0 5.04e-01 86.7% 86.0%
4943876 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.67 55.0 4.40e-01 95.6% 50.5%
5038850 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 55.0 4.48e-01 95.6% 53.3%
5046193 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 55.0 4.45e-01 95.6% 53.3%
5022234 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.66 53.0 4.58e-01 95.6% 62.8%
5018860 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.64 56.0 3.90e-01 100.0% 34.7%
4584721 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.60 48.0 3.19e-01 100.0% 32.4%
4126423 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.59 47.0 3.20e-01 100.0% 26.5%
3227701 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 46.0 2.76e-01 97.8% 18.8%
3237445 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 39.0 2.25e-01 80.0% 35.4%
5060584 229.1.1.1 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.53 40.0 3.50e-01 93.3% 94.1%
3601519 7579.1.1.107 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_2 0.53 42.0 2.62e-01 100.0% 36.5%