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MK813941.1__QEG08927.1__X__00212

Bact-Vir

MK813941.1__QEG08927.1__X__00212

Identity

Accession:
MK813941 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-108
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.83 76.0 6.98e-01 97.0% 83.1%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.79 64.0 5.80e-01 95.5% 65.9%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 68.0 5.57e-01 97.0% 59.1%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.75 63.0 5.69e-01 97.0% 67.8%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 65.0 6.39e-01 95.5% 90.1%
7v6bA01 3.30.160.380 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain 0.74 67.0 5.54e-01 100.0% 78.1%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 58.0 5.62e-01 85.1% 85.5%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 55.0 5.79e-01 100.0% 100.0%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.66 56.0 3.41e-01 95.5% 58.9%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.64 54.0 4.06e-01 95.5% 80.2%
3razA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 49.0 3.98e-01 85.1% 88.1%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.64 48.0 4.79e-01 95.5% 78.9%
4nwyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 53.0 4.37e-01 94.0% 81.2%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 36.0 3.52e-01 71.6% 50.0%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.62 50.0 3.85e-01 94.0% 99.4%
4f9zA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 51.0 4.29e-01 92.5% 84.5%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 53.0 4.01e-01 100.0% 40.1%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 49.0 4.07e-01 91.0% 98.4%
3cynB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 46.0 3.43e-01 80.6% 78.0%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.61 43.0 3.64e-01 74.6% 45.1%
4uuwA03 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.60 48.0 3.85e-01 92.5% 89.8%
4n5hX00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 46.0 3.07e-01 89.6% 83.8%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.55e-01 77.6% 45.8%
2e1qC05 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.59 48.0 4.12e-01 95.5% 71.2%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 32.0 3.50e-01 73.1% 63.2%
3ii7A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.59 43.0 2.87e-01 79.1% 27.4%
3gkmA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 47.0 3.68e-01 91.0% 61.1%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 48.0 4.00e-01 95.5% 92.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.51e-01 85.1% 44.4%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 49.0 4.29e-01 100.0% 68.2%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 39.0 3.15e-01 70.1% 51.6%
2b5eA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 41.0 3.51e-01 80.6% 77.3%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 43.0 3.40e-01 89.6% 87.4%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 41.0 2.73e-01 89.6% 27.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.07e-01 76.1% 72.1%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 40.0 2.86e-01 91.0% 25.5%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.23e-01 82.1% 48.4%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 42.0 2.75e-01 88.1% 96.5%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 43.0 3.68e-01 100.0% 97.5%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 44.0 3.97e-01 98.5% 95.7%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 41.0 3.24e-01 91.0% 92.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591242 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.85 78.0 6.15e-01 97.0% 64.0%
4665955 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.84 78.0 7.07e-01 97.0% 81.2%
3966973 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.84 77.0 6.73e-01 97.0% 71.6%
3661468 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.84 77.0 6.73e-01 97.0% 72.6%
3178493 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.84 77.0 6.56e-01 97.0% 69.0%
3785552 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.84 77.0 5.82e-01 97.0% 49.3%
3635007 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.83 77.0 6.05e-01 97.0% 54.4%
4015067 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.83 75.0 6.03e-01 95.5% 55.8%
3753952 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.83 76.0 6.00e-01 97.0% 54.4%
3820953 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.83 76.0 6.75e-01 97.0% 85.6%
3598137 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.82 74.0 6.80e-01 97.0% 81.2%
3708684 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.82 75.0 6.83e-01 97.0% 81.2%
3649935 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.80 74.0 6.62e-01 98.5% 82.2%
3605915 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.80 73.0 6.64e-01 97.0% 81.2%
4809148 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.80 72.0 7.01e-01 97.0% 94.4%
3219930 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.79 72.0 5.73e-01 97.0% 68.0%
3601409 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.79 71.0 5.49e-01 95.5% 70.4%
3926374 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.79 70.0 5.44e-01 95.5% 66.7%
3582023 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.79 67.0 5.20e-01 92.5% 60.7%
4023928 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.78 69.0 5.37e-01 95.5% 68.9%
3599323 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.78 70.0 6.24e-01 95.5% 83.3%
4969162 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.78 56.0 5.91e-01 95.5% 85.0%
3346435 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.77 68.0 4.99e-01 97.0% 56.0%
5020788 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.76 55.0 5.61e-01 95.5% 78.5%
3395858 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.75 66.0 4.84e-01 95.5% 58.8%
3223298 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.75 65.0 4.87e-01 95.5% 63.1%
3470254 330.3.1.1 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.74 65.0 4.74e-01 95.5% 54.3%
3481288 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 63.0 5.21e-01 92.5% 61.7%
3333267 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.73 65.0 5.78e-01 98.5% 74.7%
4960250 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.73 65.0 5.61e-01 97.0% 70.0%
3250471 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 64.0 5.66e-01 97.0% 71.6%
3500942 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.72 65.0 5.49e-01 100.0% 72.7%
5008315 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.72 65.0 5.58e-01 97.0% 66.0%
3660311 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 60.0 5.70e-01 91.0% 78.8%
4393617 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.72 62.0 4.98e-01 95.5% 52.3%
3934685 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 63.0 5.81e-01 95.5% 76.5%
3317750 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 59.0 4.48e-01 89.6% 40.0%
3299579 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 62.0 6.14e-01 97.0% 92.9%
3510694 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 62.0 5.51e-01 98.5% 76.8%
3715871 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 62.0 4.99e-01 98.5% 56.8%
5061231 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.68 51.0 5.33e-01 100.0% 91.7%
3933413 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.63 53.0 3.97e-01 95.5% 89.7%
3992641 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.63 39.0 3.88e-01 89.6% 60.0%
3560854 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.63 44.0 3.47e-01 74.6% 81.4%
3803237 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 52.0 4.09e-01 97.0% 85.2%
4932715 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 52.0 4.24e-01 97.0% 96.3%
3619889 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.61 38.0 3.81e-01 89.6% 60.0%
3727816 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 46.0 4.14e-01 83.6% 85.0%
3853151 2485.1.1.94 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DJC16_C 0.61 49.0 3.77e-01 88.1% 79.3%
4823230 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 42.0 4.01e-01 73.1% 70.4%
3215044 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.60 50.0 3.17e-01 97.0% 32.7%
3248163 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 3.36e-01 83.6% 36.4%
4956219 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 48.0 4.06e-01 92.5% 90.0%
4381621 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 50.0 3.64e-01 97.0% 71.3%
3888868 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 44.0 3.60e-01 83.6% 44.2%
3630313 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 44.0 3.55e-01 79.1% 43.2%
3782385 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.59 40.0 2.39e-01 70.1% 24.2%
3174481 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 43.0 3.23e-01 79.1% 85.6%
3491998 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.37e-01 79.1% 52.6%
3581354 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 45.0 3.69e-01 92.5% 85.2%
3540167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.42e-01 92.5% 43.7%
3591199 77.2.1.0 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.53 42.0 3.56e-01 88.1% 93.9%
1168767 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 2.96e-01 89.6% 92.9%
3898218 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 40.0 2.98e-01 85.1% 32.6%
4261005 2484.1.1.36 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.51 42.0 2.92e-01 97.0% 44.5%
3615224 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.51 41.0 3.01e-01 95.5% 46.0%
3077774 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 41.0 3.34e-01 91.0% 85.1%