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MK814752.1__QCG77235.1__SEA_LUTUM_78__00078
Bact-VirMK814752.1__QCG77235.1__SEA_LUTUM_78__00078
Identity
- Accession:
- MK814752 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Taxonomy
TaxID: 2572527
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-72
Domain cluster:
rep: JN116824.1__AEV51964.1__X__00028__D7-67
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.71 | 64.0 | 4.97e-01 | 98.4% | 65.6% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.68 | 55.0 | 4.67e-01 | 100.0% | 52.8% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.68 | 58.0 | 4.63e-01 | 98.4% | 64.9% |
| 2mheA00 | 3.30.70.2400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 | 0.66 | 59.0 | 5.62e-01 | 100.0% | 86.5% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.60 | 50.0 | 3.90e-01 | 98.4% | 84.9% |
| 2rijA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 51.0 | 3.85e-01 | 100.0% | 65.1% |
| 2oo3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 49.0 | 3.31e-01 | 100.0% | 22.5% |
| 2hevF00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 39.0 | 3.20e-01 | 100.0% | 34.9% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 3.96e-01 | 92.1% | 100.0% |
| 3sd2A01 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 39.0 | 3.72e-01 | 100.0% | 59.7% |
| 3d33A00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.62e-01 | 100.0% | 54.3% |
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.55 | 39.0 | 2.78e-01 | 76.2% | 60.1% |
| 1ciiA02 | 3.30.305.10 | Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 | 0.55 | 37.0 | 3.15e-01 | 76.2% | 43.6% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.54 | 41.0 | 4.19e-01 | 100.0% | 90.2% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 38.0 | 3.15e-01 | 85.7% | 41.3% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 42.0 | 3.83e-01 | 100.0% | 63.3% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 45.0 | 3.88e-01 | 100.0% | 65.1% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.35e-01 | 100.0% | 51.2% |
| 5hccB02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.51 | 38.0 | 3.42e-01 | 100.0% | 55.8% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 38.0 | 2.79e-01 | 79.4% | 80.7% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 39.0 | 3.37e-01 | 100.0% | 51.9% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 37.0 | 3.58e-01 | 93.7% | 69.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3582833 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.66 | 49.0 | 4.15e-01 | 100.0% | 46.4% |
| 3273589 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.64 | 54.0 | 3.55e-01 | 96.8% | 69.3% |
| 3795936 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.64 | 53.0 | 3.99e-01 | 96.8% | 85.9% |
| 4659490 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.63 | 50.0 | 4.24e-01 | 100.0% | 50.4% |
| 3383629 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 45.0 | 3.46e-01 | 77.8% | 53.3% |
| 3784847 | 11.1.1.378 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 | 0.59 | 52.0 | 3.83e-01 | 100.0% | 48.2% |
| 3943661 | 304.5.1.13 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 | 0.59 | 49.0 | 4.27e-01 | 96.8% | 100.0% |
| 4971610 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 44.0 | 3.48e-01 | 81.0% | 83.8% |
| 5049138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 43.0 | 3.37e-01 | 79.4% | 89.6% |
| 5072248 | 3662.1.1.4 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac | 0.58 | 42.0 | 3.33e-01 | 77.8% | 46.5% |
| 4002986 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.58 | 49.0 | 3.97e-01 | 96.8% | 90.4% |
| 4030677 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.58 | 42.0 | 3.24e-01 | 79.4% | 92.0% |
| 3338688 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.57 | 48.0 | 4.83e-01 | 100.0% | 96.9% |
| 4939340 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.57 | 40.0 | 3.48e-01 | 87.3% | 46.6% |
| 3793097 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.56 | 49.0 | 3.98e-01 | 100.0% | 92.8% |
| 3483628 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 48.0 | 3.88e-01 | 100.0% | 59.2% |
| 3679255 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.56 | 42.0 | 3.43e-01 | 84.1% | 60.0% |
| 1002449 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.55 | 40.0 | 3.28e-01 | 85.7% | 41.0% |
| 3959474 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 47.0 | 3.71e-01 | 100.0% | 47.1% |
| 3852865 | 2492.1.1.23 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 | 0.53 | 44.0 | 3.31e-01 | 100.0% | 71.9% |
| 3593981 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.53 | 44.0 | 3.87e-01 | 100.0% | 59.0% |
| 4561918 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.53 | 44.0 | 3.76e-01 | 95.2% | 100.0% |
| 3608234 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 45.0 | 3.63e-01 | 100.0% | 46.7% |
| 4976679 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 46.0 | 3.91e-01 | 100.0% | 60.0% |
| 3472190 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 45.0 | 2.95e-01 | 100.0% | 61.3% |
| 4942796 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 45.0 | 3.83e-01 | 100.0% | 57.3% |
| 5049412 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 42.0 | 3.55e-01 | 100.0% | 49.6% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.52 | 39.0 | 3.92e-01 | 92.1% | 81.5% |
| 3508990 | 3115.3.1.2 ↗ | a+b two layers › GP2-like › P56 › P56 › DUF2922 | 0.51 | 42.0 | 4.27e-01 | 96.8% | 95.3% |
| 3478358 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.58e-01 | 100.0% | 61.6% |
| 4029586 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.51 | 42.0 | 3.37e-01 | 100.0% | 97.3% |
| 3388281 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.51 | 40.0 | 3.11e-01 | 95.2% | 98.8% |
| 4933926 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.58e-01 | 96.8% | 90.0% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.51 | 38.0 | 3.87e-01 | 96.8% | 84.6% |
| 3700769 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.50 | 41.0 | 3.56e-01 | 93.7% | 57.1% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.50 | 41.0 | 3.76e-01 | 98.4% | 88.9% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.50 | 37.0 | 3.83e-01 | 92.1% | 90.0% |
| 3291916 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 40.0 | 2.71e-01 | 98.4% | 20.3% |
| 3259121 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 3.50e-01 | 100.0% | 69.6% |