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MK817115.1__QDF13734.1__vBEcoMphAPEC6_gp104c__00103

Bact-Vir

MK817115.1__QDF13734.1__vBEcoMphAPEC6_gp104c__00103

Identity

Accession:
MK817115 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Asteriusvirus› Escherichia_phage_vB_EcoM_phAPEC6

TaxID: 2588085

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
Domain cluster: rep: OP709960.1__WAK43842.1__zjk6_44__00044__D71-129
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 6.14e-01 92.4% 90.9%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.73 62.0 5.58e-01 95.5% 81.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.98e-01 92.4% 92.4%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.40e-01 78.8% 89.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 58.0 5.25e-01 95.5% 78.0%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 51.0 4.29e-01 83.3% 78.8%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 5.23e-01 92.4% 97.5%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.26e-01 84.8% 86.4%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.64 38.0 4.16e-01 83.3% 73.1%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.64 53.0 5.10e-01 95.5% 88.3%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 49.0 3.90e-01 86.4% 75.9%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 4.07e-01 83.3% 80.6%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 44.0 3.52e-01 77.3% 65.7%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.22e-01 92.4% 85.6%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 41.0 3.27e-01 72.7% 44.5%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.97e-01 95.5% 100.0%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.58 42.0 3.19e-01 78.8% 83.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.71e-01 90.9% 98.4%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.56 45.0 4.34e-01 97.0% 90.4%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 46.0 4.16e-01 98.5% 87.5%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 40.0 3.11e-01 80.3% 47.6%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 3.99e-01 81.8% 87.1%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 44.0 4.30e-01 97.0% 98.6%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 38.0 2.80e-01 80.3% 94.7%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 46.0 4.06e-01 98.5% 95.9%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 43.0 3.96e-01 100.0% 94.7%
3r1kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 2.97e-01 75.8% 54.1%
2vlgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.21e-01 75.8% 55.9%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.45e-01 84.8% 57.7%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.12e-01 87.9% 85.2%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 41.0 3.99e-01 100.0% 98.7%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 43.0 3.26e-01 100.0% 96.0%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 2.96e-01 86.4% 79.2%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.18e-01 98.5% 93.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3358147 220.1.1.241 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EPL1 0.75 56.0 3.76e-01 80.3% 31.2%
4004760 64.1.1.5 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF333 0.74 46.0 5.40e-01 90.9% 93.3%
4163661 4.1.1.446 ↗ beta barrels › SH3 › SH3 › SH3 › PF30222 0.74 64.0 6.34e-01 93.9% 98.5%
4999741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 63.0 5.91e-01 93.9% 77.5%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 54.0 4.54e-01 80.3% 67.0%
3666672 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 54.0 4.61e-01 80.3% 70.9%
3402045 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.71 54.0 4.69e-01 83.3% 81.0%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.71 60.0 5.72e-01 92.4% 81.8%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.70 56.0 5.67e-01 90.9% 89.2%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.70 51.0 5.53e-01 78.8% 94.5%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 59.0 5.71e-01 95.5% 86.7%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.69 51.0 5.46e-01 78.8% 94.5%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.68 50.0 5.53e-01 78.8% 100.0%
4578838 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.68 39.0 4.21e-01 78.8% 67.3%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.66 56.0 4.92e-01 95.5% 69.3%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.32e-01 87.9% 98.3%
4020096 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 55.0 4.34e-01 93.9% 62.9%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 51.0 4.25e-01 89.4% 53.3%
4480519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.79e-01 77.3% 86.7%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.82e-01 74.2% 100.0%
3425722 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.63 42.0 3.92e-01 93.9% 54.1%
3432156 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.62 42.0 4.50e-01 93.9% 83.6%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.60e-01 86.4% 100.0%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.47e-01 71.2% 90.9%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.81e-01 84.8% 100.0%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.69e-01 86.4% 96.9%
3839254 601.52.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.60 49.0 3.15e-01 95.5% 57.6%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 49.0 4.99e-01 97.0% 100.0%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.82e-01 100.0% 95.7%
3590514 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.55 40.0 4.33e-01 78.8% 96.4%
3788312 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 38.0 2.17e-01 74.2% 15.4%
3700562 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.53 40.0 3.28e-01 83.3% 85.2%
4029890 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 45.0 2.96e-01 100.0% 26.2%
4019819 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 41.0 2.86e-01 87.9% 42.4%
167222 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.52 31.0 3.24e-01 71.2% 60.7%
3967584 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.52 42.0 4.03e-01 93.9% 97.5%
5001360 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 2.79e-01 100.0% 54.0%
3520846 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 39.0 3.54e-01 86.4% 67.0%
3953251 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 43.0 3.46e-01 98.5% 95.9%
3236244 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.39e-01 89.4% 82.6%
3569505 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.50 38.0 3.45e-01 84.8% 89.5%