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MK819239.1__QIV64664.1__X__00018

Bact-Vir

MK819239.1__QIV64664.1__X__00018

Identity

Accession:
MK819239 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_PaeP_YA3

TaxID: 2588095

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-129
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.90 53.0 3.70e-01 94.5% 22.3%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.71 47.0 5.24e-01 87.3% 85.1%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.60 44.0 3.55e-01 75.5% 60.6%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.60 41.0 3.86e-01 70.9% 93.2%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 41.0 2.62e-01 74.5% 27.3%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 29.0 3.65e-01 74.5% 87.5%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.54 29.0 2.89e-01 70.0% 47.5%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.74e-01 74.5% 90.4%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 39.0 2.56e-01 75.5% 23.0%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 37.0 3.25e-01 71.8% 47.6%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.53 42.0 3.57e-01 86.4% 91.1%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.11e-01 78.2% 74.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
224047 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.94 50.0 6.55e-01 82.7% 89.4%
1157731 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.94 50.0 5.94e-01 82.7% 74.7%
3588252 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.89 50.0 6.50e-01 82.7% 95.4%
3970982 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.82 51.0 6.39e-01 92.7% 100.0%
5012323 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 39.0 2.62e-01 77.3% 16.1%
3553132 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 41.0 2.42e-01 74.5% 17.0%
3973842 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.56 46.0 4.21e-01 90.0% 82.4%
5032940 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.91e-01 77.3% 93.6%
4941345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 30.0 3.30e-01 100.0% 67.8%
3972974 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 29.0 3.29e-01 100.0% 75.0%
4339977 5084.5.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.50 43.0 3.03e-01 96.4% 90.6%