←Back to structures

MK867354.2__QFG06301.1__SSCSM1_44__00044

Bact-Vir

MK867354.2__QFG06301.1__SSCSM1_44__00044

Identity

Accession:
MK867354 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Zhoulongquanvirus› Synechococcus_phage_S-SCSM1

TaxID: 2588487

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-55
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.79 56.0 3.37e-01 74.5% 11.8%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.77 67.0 5.46e-01 100.0% 52.6%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 67.0 4.78e-01 100.0% 85.9%
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.75 65.0 5.73e-01 100.0% 74.4%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.75 53.0 5.39e-01 76.5% 76.5%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.74 52.0 4.64e-01 82.4% 52.1%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.73 62.0 4.96e-01 96.1% 54.4%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.73 50.0 4.99e-01 74.5% 69.8%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.73 61.0 5.63e-01 96.1% 82.1%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.72 61.0 5.30e-01 98.0% 62.0%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.71 61.0 6.00e-01 100.0% 89.3%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.71 57.0 5.18e-01 98.0% 93.5%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 53.0 3.15e-01 86.3% 10.3%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 50.0 3.54e-01 76.5% 25.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 48.0 4.19e-01 72.5% 54.1%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.69 59.0 4.37e-01 100.0% 44.0%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.68 57.0 5.01e-01 98.0% 74.7%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.68 48.0 5.10e-01 76.5% 95.1%
3a9fA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.67 45.0 4.06e-01 70.6% 51.5%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.68e-01 76.5% 71.4%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 56.0 4.92e-01 100.0% 70.4%
2mmbA00 4.10.640.20 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › 0.66 45.0 3.56e-01 72.5% 57.9%
3gfoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 47.0 2.98e-01 74.5% 64.9%
2kruA01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.66 54.0 5.41e-01 96.1% 96.2%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.66 51.0 4.63e-01 96.1% 60.8%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.66 56.0 5.61e-01 98.0% 96.2%
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.64 54.0 4.88e-01 100.0% 78.9%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 47.0 3.23e-01 78.4% 96.0%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 55.0 4.69e-01 100.0% 66.3%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 52.0 4.55e-01 100.0% 75.3%
1eljA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 53.0 3.70e-01 100.0% 76.8%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.45e-01 90.2% 64.4%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 47.0 2.96e-01 90.2% 71.5%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.55 43.0 3.42e-01 96.1% 59.4%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.54 46.0 3.27e-01 94.1% 55.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3235805 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.83 60.0 6.52e-01 76.5% 97.5%
3722642 131.2.1.0 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like 0.82 74.0 4.47e-01 100.0% 16.7%
4600245 3640.1.1.1 ↗ alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp 0.81 58.0 5.03e-01 76.5% 49.4%
4594328 181.1.1.2 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › FlhF_N 0.80 70.0 6.23e-01 100.0% 68.0%
3700974 131.2.1.3 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd 0.80 72.0 4.25e-01 98.0% 14.6%
3885705 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.80 59.0 4.93e-01 78.4% 47.1%
3740118 4336.2.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 0.80 61.0 4.95e-01 82.4% 48.4%
3588971 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.79 58.0 5.12e-01 78.4% 58.7%
3426642 375.1.1.96 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.79 57.0 5.76e-01 76.5% 80.0%
5016525 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.79 68.0 5.94e-01 100.0% 65.0%
1388518 243.1.1.33 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5105 0.76 64.0 4.19e-01 88.2% 49.2%
3619549 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.75 55.0 3.26e-01 80.4% 10.4%
3262519 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 53.0 3.56e-01 76.5% 21.6%
3903726 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 61.0 5.88e-01 100.0% 81.7%
3839206 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.74 53.0 4.56e-01 76.5% 50.0%
3946717 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 63.0 5.76e-01 100.0% 78.6%
3503648 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.73 55.0 5.26e-01 82.4% 70.0%
4120356 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.71 62.0 5.00e-01 100.0% 53.0%
5023530 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.71 60.0 5.74e-01 100.0% 93.3%
4417777 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.71 51.0 3.85e-01 78.4% 34.6%
3242517 4009.1.1.3 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12 0.71 58.0 5.27e-01 100.0% 69.3%
3616358 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.70 57.0 5.34e-01 100.0% 80.0%
2427 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.70 51.0 4.25e-01 82.4% 44.4%
3114 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.70 57.0 5.24e-01 100.0% 97.3%
3958582 101.1.1.282 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF222 0.70 59.0 4.34e-01 100.0% 44.0%
4038157 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.70 60.0 6.07e-01 98.0% 98.0%
5042877 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.70 55.0 5.55e-01 100.0% 90.0%
4299866 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.70 61.0 5.86e-01 100.0% 86.7%
4327215 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.70 50.0 3.88e-01 76.5% 38.3%
4167763 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.70 61.0 3.60e-01 100.0% 13.2%
5034353 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.70 60.0 3.70e-01 98.0% 52.3%
4942992 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.69 59.0 5.98e-01 96.1% 98.0%
4948317 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.69 59.0 6.04e-01 96.1% 98.0%
4591229 190.1.1.8 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.69 60.0 4.94e-01 100.0% 55.8%
4259065 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.68 54.0 4.80e-01 88.2% 72.0%
4039262 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.67 47.0 2.98e-01 76.5% 14.9%
3995291 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 58.0 5.43e-01 100.0% 83.1%
5072245 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.66 54.0 5.36e-01 98.0% 89.1%
3831850 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 52.0 3.07e-01 100.0% 11.8%
5060737 179.1.1.1 ↗ alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.62 49.0 5.01e-01 100.0% 92.0%
4973086 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.62 50.0 4.94e-01 100.0% 90.9%
3794529 148.1.3.193 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TRAP-gamma 0.61 47.0 3.45e-01 90.2% 72.9%
3916975 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.61 45.0 4.13e-01 78.4% 72.3%
3393434 108.1.1.123 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C 0.59 49.0 4.29e-01 100.0% 60.0%
3715567 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 4.23e-01 100.0% 57.9%
3219460 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 46.0 4.59e-01 94.1% 85.5%
4037683 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.57 43.0 4.08e-01 100.0% 67.7%