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MK867354.2__QFG06433.1__SSCSM1_170__00170

Bact-Vir

MK867354.2__QFG06433.1__SSCSM1_170__00170

Identity

Accession:
MK867354 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Zhoulongquanvirus› Synechococcus_phage_S-SCSM1

TaxID: 2588487

Cluster

View cluster (250 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-73_149-169
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kqzA01 1.10.2020.20 Mainly Alpha › Orthogonal Bundle › uronate isomerase, domain 2, chain A › 0.56 39.0 3.60e-01 71.3% 93.7%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.53 38.0 2.98e-01 77.7% 49.4%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.56e-01 73.4% 81.0%
D2 medium residues 74-148_170-196
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.82 68.0 5.41e-01 86.3% 60.4%
2g19A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.79 69.0 5.30e-01 93.1% 61.1%
4xcbD00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.78 67.0 4.99e-01 93.1% 71.7%
3kglB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 56.0 4.23e-01 77.5% 51.6%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 55.0 4.44e-01 76.5% 52.2%
1gp6A00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.72 62.0 4.21e-01 92.2% 47.9%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 49.0 4.60e-01 73.5% 71.0%
1w9yA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.69 58.0 4.15e-01 92.2% 54.7%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 4.16e-01 72.5% 95.0%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 4.92e-01 85.3% 96.6%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 3.14e-01 77.5% 70.3%
4eaeA00 2.60.40.4170 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 4.03e-01 97.1% 98.9%
2i0kA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.55 46.0 3.38e-01 90.2% 72.3%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.55 39.0 3.87e-01 72.5% 75.2%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.01e-01 84.3% 92.2%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.54 37.0 4.13e-01 77.5% 90.0%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 43.0 3.56e-01 87.3% 94.6%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.68e-01 85.3% 97.4%
3v4vB01 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.53 41.0 3.83e-01 82.4% 73.4%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.53 41.0 4.48e-01 85.3% 100.0%
1dzlA00 2.60.175.20 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus 0.52 38.0 2.50e-01 76.5% 66.2%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.70e-01 71.6% 100.0%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 40.0 2.94e-01 82.4% 48.2%
1k1gA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 38.0 3.62e-01 78.4% 71.3%
1jzdC00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.51 39.0 3.76e-01 81.4% 83.1%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.01e-01 84.3% 82.9%
4jvuA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.90e-01 84.3% 77.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3684421 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 59.0 5.00e-01 92.2% 80.6%
3266725 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.66 61.0 4.74e-01 100.0% 65.7%
3999005 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.64 34.0 4.17e-01 78.4% 80.0%
3888291 11.2.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 0.63 50.0 3.66e-01 86.3% 62.9%
3785564 10.32.1.244 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.61 49.0 4.64e-01 86.3% 100.0%
3623537 11.2.1.50 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 0.60 48.0 4.06e-01 86.3% 99.4%
4939143 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 3.83e-01 77.5% 60.7%
1614535 929.1.1.3 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C3 0.57 38.0 4.37e-01 73.5% 98.6%
3477455 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 41.0 3.70e-01 76.5% 78.6%
1211011 11.4.1.4 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF5068 0.56 48.0 4.01e-01 97.1% 98.4%
3673973 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.56 47.0 4.53e-01 90.2% 97.4%
4016469 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 46.0 4.28e-01 86.3% 99.2%
4972680 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 38.0 3.95e-01 70.6% 98.9%
5009940 304.51.1.9 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6_N 0.55 44.0 4.21e-01 86.3% 99.2%
3306289 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 43.0 3.72e-01 86.3% 87.3%
3357776 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 43.0 2.74e-01 87.3% 31.9%
1158363 10.32.1.171 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SsfX3_N 0.53 41.0 3.70e-01 85.3% 98.7%
4447154 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.53 42.0 4.43e-01 83.3% 100.0%
4969532 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 3.82e-01 86.3% 81.2%
5081916 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.92e-01 83.3% 87.5%
4382620 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 39.0 4.04e-01 76.5% 86.3%
3734648 11.1.1.668 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_M 0.53 45.0 3.98e-01 94.1% 91.3%
1405132 304.51.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.52 42.0 3.26e-01 88.2% 89.0%
5083331 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.84e-01 82.4% 85.8%
3686424 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.52 41.0 3.73e-01 86.3% 68.6%
4020554 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.52 40.0 3.82e-01 83.3% 100.0%
1888603 11.1.5.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Fimbrial 0.51 40.0 3.63e-01 83.3% 76.3%
3639075 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 3.76e-01 80.4% 78.3%
3710159 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.51 38.0 3.72e-01 77.5% 75.5%
3189356 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 39.0 3.08e-01 82.4% 91.2%
5070959 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 37.0 3.83e-01 75.5% 88.4%
3285854 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.51 40.0 3.73e-01 84.3% 89.9%
4008266 11.1.5.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Fimbrial 0.51 39.0 3.48e-01 83.3% 72.0%
3784888 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.50 39.0 3.34e-01 82.4% 83.6%
4929284 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 40.0 3.58e-01 87.3% 68.0%
None — 0.50 44.0 2.91e-01 99.0% 39.6%
3678555 304.55.1.15 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.50 44.0 3.85e-01 98.0% 90.4%