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MK867354.2__QFG06478.1__SSCSM1_214__00214
Bact-VirMK867354.2__QFG06478.1__SSCSM1_214__00214
Identity
- Accession:
- MK867354 ↗
- Kingdom:
- phage
Quality
46.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Zhoulongquanvirus›
Synechococcus_phage_S-SCSM1
TaxID: 2588487
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 290-340
D2
high
residues 623-668_688-749
D3
high
residues 802-920
Domain cluster:
rep: NC_023549.1__YP_009004248.1__CN1A_36__00036__D3-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02557.23 best | VanY | 41.8 | 1.30e-10 | 80.7% | 72.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d0yA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.83 | 63.0 | 5.35e-01 | 79.0% | 66.3% |
| 1r44A00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.82 | 78.0 | 6.36e-01 | 100.0% | 92.1% |
| 4mphA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.81 | 76.0 | 6.50e-01 | 100.0% | 76.2% |
| 5hnmC00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.79 | 75.0 | 6.38e-01 | 99.2% | 78.1% |
| 4muqA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.78 | 74.0 | 6.86e-01 | 100.0% | 95.9% |
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.78 | 70.0 | 6.72e-01 | 95.0% | 96.2% |
| 1vhhA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.72 | 64.0 | 5.79e-01 | 100.0% | 72.0% |
| 6u26A01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.71 | 38.0 | 4.39e-01 | 73.1% | 70.5% |
| 1tzpB00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.70 | 65.0 | 5.10e-01 | 100.0% | 78.8% |
| 1lbuA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.68 | 61.0 | 5.91e-01 | 96.6% | 89.1% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.63 | 34.0 | 3.76e-01 | 78.2% | 63.6% |
| 3zx4A02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.63 | 43.0 | 4.89e-01 | 77.3% | 96.6% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.62 | 34.0 | 3.74e-01 | 78.2% | 65.6% |
| 2vxzA02 | 1.10.10.1490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 32.0 | 3.64e-01 | 97.5% | 70.1% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 27.0 | 3.28e-01 | 95.0% | 82.2% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 31.0 | 2.95e-01 | 100.0% | 48.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978719 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.83 | 78.0 | 6.45e-01 | 100.0% | 90.0% |
| 3256406 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.83 | 78.0 | 6.30e-01 | 100.0% | 81.4% |
| 5590 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.82 | 78.0 | 6.36e-01 | 100.0% | 92.1% |
| 4010530 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.82 | 76.0 | 6.66e-01 | 98.3% | 95.9% |
| 3961855 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.82 | 77.0 | 6.33e-01 | 100.0% | 90.5% |
| 1103093 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.80 | 76.0 | 6.42e-01 | 100.0% | 75.0% |
| 1297179 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.80 | 76.0 | 6.11e-01 | 100.0% | 68.5% |
| 3282282 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.80 | 73.0 | 7.09e-01 | 95.8% | 88.5% |
| 3589476 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.80 | 75.0 | 5.82e-01 | 100.0% | 57.1% |
| 228616 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.78 | 74.0 | 5.62e-01 | 100.0% | 55.8% |
| 2448156 | 307.1.1.6 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_4 | 0.78 | 70.0 | 6.41e-01 | 95.0% | 84.1% |
| None | — | 0.78 | 70.0 | 6.43e-01 | 95.0% | 86.5% | |
| 3589629 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.76 | 72.0 | 5.93e-01 | 100.0% | 76.4% |
| 3914730 | 307.1.1.1 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › HH_signal | 0.74 | 52.0 | 5.94e-01 | 76.5% | 97.7% |
| 3942276 | 307.1.1.8 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_2 | 0.67 | 59.0 | 5.53e-01 | 95.8% | 94.5% |
| 3166153 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.60 | 52.0 | 5.10e-01 | 100.0% | 86.2% |
| 5023339 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.58 | 35.0 | 4.14e-01 | 77.3% | 98.6% |
| 4963887 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.54 | 41.0 | 3.13e-01 | 91.6% | 33.1% |
| 3819590 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.53 | 36.0 | 3.06e-01 | 98.3% | 41.0% |
| 5023773 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 37.0 | 3.27e-01 | 100.0% | 49.7% |
| 4944180 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.52 | 35.0 | 2.75e-01 | 74.8% | 30.6% |
| 3282945 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.52 | 36.0 | 2.89e-01 | 76.5% | 33.6% |
| 4945510 | 304.111.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C | 0.52 | 42.0 | 3.78e-01 | 89.9% | 85.3% |
| 4889802 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.51 | 35.0 | 2.90e-01 | 73.1% | 37.5% |
D4
high
residues 968-1050
D5
medium
residues 414-514