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MK867354.2__QFG06522.1__SSCSM1_258__00258

Bact-Vir

MK867354.2__QFG06522.1__SSCSM1_258__00258

Identity

Accession:
MK867354 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Zhoulongquanvirus› Synechococcus_phage_S-SCSM1

TaxID: 2588487

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.73 48.0 4.69e-01 75.5% 62.1%
2napA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.68 46.0 4.50e-01 73.6% 65.5%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.67 46.0 4.56e-01 73.6% 69.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 49.0 4.39e-01 90.6% 58.7%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.61 45.0 4.06e-01 83.0% 57.7%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 46.0 3.82e-01 98.1% 48.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 36.0 2.82e-01 75.5% 26.4%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 3.64e-01 98.1% 60.9%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.56 46.0 3.54e-01 98.1% 85.3%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.55 44.0 3.11e-01 92.5% 72.4%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.19e-01 90.6% 38.6%
2xfmA00 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.53 44.0 3.48e-01 96.2% 64.2%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.35e-01 75.5% 66.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 3.39e-01 98.1% 51.2%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.17e-01 83.0% 66.3%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 40.0 2.71e-01 86.8% 72.9%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 39.0 3.20e-01 96.2% 90.4%
4fe9A01 2.60.40.3640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.38e-01 100.0% 93.3%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 32.0 3.37e-01 96.2% 73.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3702861 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.76 42.0 4.22e-01 79.2% 52.7%
3211833 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.75 57.0 3.63e-01 81.1% 95.8%
4550511 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 39.0 4.17e-01 75.5% 68.9%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 38.0 3.56e-01 75.5% 47.7%
3592215 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.62 37.0 3.77e-01 88.7% 58.5%
3676128 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.58 41.0 3.19e-01 73.6% 36.5%
3432877 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 3.78e-01 75.5% 73.8%
4104807 6.1.1.43 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Beta-tre_PLH30 0.56 40.0 3.07e-01 79.2% 36.3%
3910776 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 46.0 3.21e-01 96.2% 48.1%
3935170 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.54 35.0 3.62e-01 94.3% 77.8%
3903091 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.53 45.0 2.74e-01 100.0% 63.8%
3841771 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 43.0 3.22e-01 98.1% 42.7%
3564807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 43.0 3.19e-01 98.1% 41.3%
3407628 2007.9.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › MAP3K_TRAF_bd+DRHyd-ASK 0.51 41.0 3.00e-01 94.3% 30.3%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.51 36.0 2.88e-01 73.6% 97.1%
3462646 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 35.0 2.97e-01 75.5% 80.0%
3509448 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.50 32.0 3.62e-01 71.7% 87.5%
3329872 3409.1.1.3 ↗ a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 0.50 41.0 3.00e-01 100.0% 42.8%
3189994 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.50 33.0 2.94e-01 96.2% 41.1%
3821839 192.8.1.59 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › ATG14 0.50 42.0 2.72e-01 100.0% 25.1%