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MK878901.1__QDF16772.1__SEA_HANNAHD_60__00060

Bact-Vir

MK878901.1__QDF16772.1__SEA_HANNAHD_60__00060

Identity

Accession:
MK878901 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bowservirus› Gordonia_phage_HannahD

TaxID: 2583041

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-63
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fm3A00 1.20.1270.390 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.96 90.0 7.02e-01 100.0% 51.6%
4abnA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.96 62.0 3.72e-01 71.4% 11.8%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.79 71.0 5.53e-01 100.0% 49.0%
1e2aA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.78 70.0 5.48e-01 100.0% 48.0%
D2 high residues 67-119
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04255.21 best DUF433 45.2 9.30e-12 90.6% 80.4%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ga1A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 76.0 6.91e-01 100.0% 78.9%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 54.0 5.65e-01 94.3% 89.6%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.29e-01 98.1% 75.9%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 4.99e-01 83.0% 69.0%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.67e-01 83.0% 60.0%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 4.27e-01 83.0% 46.0%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 4.46e-01 84.9% 52.6%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.69e-01 83.0% 63.5%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.70 47.0 4.98e-01 71.7% 87.0%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 4.67e-01 81.1% 62.5%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 5.06e-01 98.1% 82.0%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.38e-01 83.0% 52.4%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.66 48.0 4.75e-01 90.6% 75.0%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 3.58e-01 83.0% 30.1%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.51e-01 83.0% 66.7%
1c20A00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.65 54.0 4.24e-01 100.0% 77.3%
2xf5B00 1.10.10.1530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 44.0 4.50e-01 75.5% 84.0%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.53e-01 100.0% 71.2%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 40.0 2.99e-01 75.5% 35.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932994 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.95 89.0 8.01e-01 100.0% 78.6%
4937493 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.88 78.0 7.47e-01 98.1% 90.0%
4938019 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.87 78.0 7.51e-01 100.0% 88.3%
4089208 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.87 78.0 7.29e-01 100.0% 81.5%
5076149 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.87 78.0 7.06e-01 100.0% 80.0%
2549 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.85 76.0 6.11e-01 100.0% 54.9%
4970195 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.85 76.0 6.74e-01 100.0% 74.7%
4659976 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.82 72.0 5.24e-01 100.0% 37.1%
1731538 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.82 73.0 5.35e-01 100.0% 39.3%
4999501 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.81 72.0 6.41e-01 100.0% 74.7%
3787936 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 57.0 5.45e-01 75.5% 68.3%
4031116 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 56.0 5.38e-01 75.5% 68.3%
3197445 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 53.0 5.33e-01 100.0% 76.4%
5011614 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.72 54.0 5.07e-01 90.6% 66.2%
3632013 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 5.20e-01 100.0% 82.0%
5083903 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 4.50e-01 84.9% 50.5%
3723486 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 50.0 4.82e-01 100.0% 70.0%
5060563 101.1.1.544 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.68 60.0 5.49e-01 100.0% 92.9%
4952035 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.67 55.0 5.28e-01 94.3% 80.0%
3940008 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.03e-01 81.1% 72.6%
4007417 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 2.79e-01 100.0% 55.2%