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MK878904.1__QDF16970.1__SEA_TINYTIMOTHY_17__00017

Bact-Vir

MK878904.1__QDF16970.1__SEA_TINYTIMOTHY_17__00017

Identity

Accession:
MK878904 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tinytimothyvirus› Microbacterium_phage_TinyTimothy

TaxID: 2583039

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-129
PDB
Domain cluster: rep: OQ190481.1__WDS52067.1__SEA_CARON_41__00041__D61-109
D2 high residues 148-200
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1afsA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.62 54.0 3.34e-01 98.1% 26.3%
1zgdA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.61 52.0 3.23e-01 94.3% 33.4%
1mi3A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.60 52.0 3.24e-01 100.0% 27.3%
3ucxA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 2.98e-01 98.1% 17.8%
5az0A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.57 49.0 3.10e-01 100.0% 25.0%
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.51 41.0 2.68e-01 96.2% 87.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3469643 103.12.1.11 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › Intron_maturas2 0.66 47.0 4.58e-01 77.4% 80.0%
D3 medium residues 1-77
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x7bA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 35.0 2.84e-01 70.1% 55.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597603 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 38.0 2.90e-01 77.9% 59.0%
3520394 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.51 31.0 3.24e-01 88.3% 62.9%