←Back to structures
MK880124.2__QDF14211.1__SEA_IAMGROOT_38__00038
Bact-VirMK880124.2__QDF14211.1__SEA_IAMGROOT_38__00038
Identity
- Accession:
- MK880124 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Casidaviridae›
Gardenstatevirus›
Microbacterium_phage_IAmGroot
TaxID: 2588486
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-72
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5l0wB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.82 | 55.0 | 3.99e-01 | 72.7% | 27.5% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.81 | 61.0 | 5.34e-01 | 80.0% | 71.2% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 56.0 | 4.32e-01 | 80.0% | 35.1% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.79 | 56.0 | 4.00e-01 | 74.5% | 64.5% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.79 | 58.0 | 4.30e-01 | 80.0% | 38.3% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.79 | 61.0 | 4.77e-01 | 83.6% | 41.1% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.77 | 58.0 | 5.18e-01 | 80.0% | 61.3% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 64.0 | 4.35e-01 | 100.0% | 26.9% |
| 2ca5A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 57.0 | 5.50e-01 | 80.0% | 71.0% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.75 | 54.0 | 4.96e-01 | 78.2% | 62.2% |
| 2qtfA02 | 6.10.250.2860 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 52.0 | 5.56e-01 | 81.8% | 87.2% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.73 | 59.0 | 5.07e-01 | 96.4% | 56.5% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.73 | 53.0 | 3.85e-01 | 76.4% | 62.0% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.73 | 55.0 | 3.80e-01 | 80.0% | 26.5% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.73 | 53.0 | 5.01e-01 | 78.2% | 70.1% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.72 | 49.0 | 4.45e-01 | 72.7% | 60.5% |
| 1st6A03 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.70 | 54.0 | 3.52e-01 | 83.6% | 22.3% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 53.0 | 4.22e-01 | 83.6% | 41.0% |
| 4gouA03 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.69 | 60.0 | 4.16e-01 | 100.0% | 84.8% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 57.0 | 3.61e-01 | 90.9% | 91.3% |
| 1vp7A00 | 1.10.287.1040 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit | 0.69 | 47.0 | 4.46e-01 | 76.4% | 57.4% |
| 3fcnA00 | 1.20.1220.20 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724 | 0.69 | 52.0 | 3.79e-01 | 83.6% | 31.6% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.68 | 49.0 | 3.94e-01 | 78.2% | 69.4% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 48.0 | 4.52e-01 | 80.0% | 63.0% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 51.0 | 3.93e-01 | 87.3% | 49.3% |
| 3amiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.65 | 56.0 | 3.83e-01 | 98.2% | 86.9% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 43.0 | 3.05e-01 | 72.7% | 21.5% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 47.0 | 4.46e-01 | 78.2% | 67.7% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 56.0 | 4.84e-01 | 100.0% | 65.2% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.64 | 48.0 | 4.23e-01 | 81.8% | 65.4% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 52.0 | 5.17e-01 | 94.5% | 93.1% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.62 | 54.0 | 5.02e-01 | 98.2% | 97.2% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 46.0 | 4.51e-01 | 83.6% | 75.8% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 42.0 | 4.51e-01 | 74.5% | 95.2% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.62 | 45.0 | 4.78e-01 | 80.0% | 100.0% |
| 3peuB00 | 1.25.40.510 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › GLE1-like | 0.62 | 50.0 | 3.28e-01 | 100.0% | 41.4% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 46.0 | 4.36e-01 | 81.8% | 72.7% |
| 1x3zA03 | 1.10.1740.90 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.59 | 45.0 | 3.91e-01 | 83.6% | 69.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 41.0 | 3.81e-01 | 78.2% | 58.7% |
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 39.0 | 3.81e-01 | 76.4% | 74.6% |
| 2wiyA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 44.0 | 2.66e-01 | 94.5% | 25.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600869 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.92 | 69.0 | 5.23e-01 | 78.2% | 37.4% |
| 4998877 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.87 | 66.0 | 4.63e-01 | 80.0% | 47.1% |
| 5048976 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.85 | 63.0 | 4.53e-01 | 78.2% | 30.3% |
| 4931716 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.85 | 59.0 | 5.74e-01 | 80.0% | 66.7% |
| 3461932 | 3922.1.1.189 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF630 | 0.84 | 66.0 | 5.40e-01 | 83.6% | 48.4% |
| 2492497 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.84 | 66.0 | 4.69e-01 | 83.6% | 51.7% |
| 3878682 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.83 | 62.0 | 4.09e-01 | 80.0% | 22.9% |
| 3671258 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.83 | 56.0 | 4.21e-01 | 70.9% | 100.0% |
| 1007238 | 3846.1.1.1 ↗ | alpha bundles › IcmR › IcmR › IcmR › IcmR | 0.80 | 65.0 | 6.42e-01 | 89.1% | 93.2% |
| 3228837 | 109.12.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 | 0.80 | 58.0 | 5.25e-01 | 78.2% | 58.7% |
| 4927364 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.79 | 60.0 | 5.51e-01 | 90.9% | 63.0% |
| 3459724 | 604.1.1.102 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 | 0.77 | 58.0 | 4.51e-01 | 80.0% | 39.1% |
| 4942548 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 67.0 | 4.90e-01 | 100.0% | 92.0% |
| 3218730 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.77 | 53.0 | 4.77e-01 | 80.0% | 53.3% |
| 3337015 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.76 | 58.0 | 3.78e-01 | 85.5% | 19.2% |
| 3775580 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.75 | 55.0 | 4.95e-01 | 78.2% | 81.3% |
| 3925160 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.75 | 55.0 | 3.74e-01 | 78.2% | 25.3% |
| 3740779 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.75 | 51.0 | 4.57e-01 | 70.9% | 58.7% |
| 3611163 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.74 | 57.0 | 3.31e-01 | 83.6% | 13.3% |
| 4477969 | 192.19.1.1 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like › DUF896 | 0.73 | 49.0 | 5.14e-01 | 70.9% | 88.0% |
| 3588172 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.73 | 53.0 | 3.93e-01 | 80.0% | 34.0% |
| 4674 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.72 | 52.0 | 4.94e-01 | 76.4% | 72.3% |
| 3720488 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.72 | 58.0 | 4.44e-01 | 89.1% | 54.6% |
| 3473566 | 622.1.1.19 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › Casc1_N | 0.72 | 66.0 | 5.43e-01 | 100.0% | 78.9% |
| 3742115 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.72 | 52.0 | 3.61e-01 | 78.2% | 25.3% |
| 3705476 | 109.4.1.843 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM | 0.71 | 63.0 | 3.86e-01 | 100.0% | 49.0% |
| 4373815 | 1008.1.1.96 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Spore_III_AF | 0.71 | 52.0 | 4.94e-01 | 78.2% | 67.7% |
| 3263072 | 109.4.1.427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT | 0.70 | 54.0 | 3.07e-01 | 83.6% | 8.4% |
| 3272531 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 59.0 | 3.68e-01 | 96.4% | 37.5% |
| 4408580 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.66 | 46.0 | 4.86e-01 | 76.4% | 93.3% |
| 5000728 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.65 | 57.0 | 4.58e-01 | 100.0% | 72.7% |
| 4957171 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.64 | 44.0 | 4.22e-01 | 76.4% | 61.5% |
| 4597007 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.63 | 43.0 | 4.57e-01 | 74.5% | 97.8% |
| 3484950 | 605.8.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like | 0.62 | 42.0 | 4.43e-01 | 72.7% | 97.8% |
| 4259997 | 192.15.1.133 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › NST1 | 0.61 | 51.0 | 4.20e-01 | 100.0% | 67.3% |
| 3373860 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.61 | 52.0 | 3.43e-01 | 100.0% | 36.0% |
| 3487846 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.58 | 44.0 | 3.35e-01 | 87.3% | 58.6% |