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MK883717.1__QDB73542.1__ECP26DNA_00130__00125

Bact-Vir

MK883717.1__QDB73542.1__ECP26DNA_00130__00125

Identity

Accession:
MK883717 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vequintavirus› Escherichia_phage_vB_EcoM-ECP26

TaxID: 2576873

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-63
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1egaA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 46.0 3.87e-01 81.0% 69.8%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.81e-01 72.4% 56.6%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.60 41.0 3.75e-01 87.9% 52.5%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.58 47.0 3.71e-01 89.7% 50.4%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 47.0 2.95e-01 96.6% 52.7%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 43.0 2.87e-01 91.4% 37.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 39.0 3.46e-01 75.9% 89.1%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.68e-01 96.6% 58.1%
1ceeB00 3.90.810.10 Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain 0.53 35.0 3.53e-01 82.8% 67.8%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 42.0 3.22e-01 100.0% 85.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970632 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.69 47.0 4.20e-01 70.7% 56.2%
5024720 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.63 47.0 4.54e-01 100.0% 72.3%
3164240 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.60 39.0 3.74e-01 72.4% 55.7%
5049809 304.109.1.4 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.57 48.0 4.11e-01 94.8% 65.3%
5002952 304.4.1.82 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 0.57 44.0 3.87e-01 93.1% 55.6%
3428671 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 42.0 3.98e-01 81.0% 67.1%
5071707 304.19.1.4 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › DUF2110_N 0.56 34.0 3.14e-01 70.7% 45.3%
3332869 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.54 34.0 3.62e-01 96.6% 74.0%
4886985 7523.1.1.16 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP 0.52 36.0 2.93e-01 89.7% 35.2%
4020093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 3.32e-01 94.8% 61.5%
3349201 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.50 40.0 2.85e-01 91.4% 40.0%
3433041 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 37.0 2.38e-01 79.3% 71.9%