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QDP52159.1

Arc-Vir

MK892597__QDP52159.1__Unbinned2902contig1001-1__00002

Identity

Accession:
MK892597 ↗
Protein ID:
QDP52159.1 ↗
Kingdom:
archaea

Quality

89.5 mean pLDDT

Taxonomy

Prokaryotic_dsDNA_virus_sp.

TaxID: 2591644

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 104-197
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 23.9 5.60e-05 41.5% 72.4%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.61 44.0 2.94e-01 74.5% 61.9%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.61 26.0 2.67e-01 75.5% 37.9%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 53.0 4.97e-01 97.9% 93.9%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 4.13e-01 87.2% 91.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 26.0 3.21e-01 75.5% 78.9%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.50 19.0 2.66e-01 85.1% 68.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252576 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.83 77.0 6.48e-01 97.9% 71.0%
3563383 3240.1.1.2 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.82 78.0 6.42e-01 100.0% 67.1%
3275547 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.80 57.0 5.35e-01 72.3% 78.2%
3618364 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.80 59.0 5.49e-01 76.6% 63.5%
3225281 3240.1.1.2 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.78 74.0 6.18e-01 100.0% 65.3%
3944436 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.75 69.0 6.53e-01 100.0% 85.5%
4083451 192.2.1.20 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP 0.60 37.0 4.04e-01 100.0% 73.8%
4467663 601.51.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › Flagellin_N,Flagellin_C 0.57 49.0 3.56e-01 97.9% 56.1%
4984126 3396.1.1.0 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A 0.56 31.0 3.60e-01 83.0% 76.9%
4972768 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 33.0 2.34e-01 84.0% 20.0%
4996949 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.54 41.0 4.38e-01 79.8% 100.0%
3882804 263.1.1.4 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT 0.54 24.0 2.92e-01 73.4% 62.5%
5039869 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 42.0 3.97e-01 90.4% 82.5%
3326674 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.52 27.0 3.22e-01 74.5% 78.2%
3652035 601.16.1.8 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.51 43.0 3.53e-01 93.6% 90.9%
D2 medium residues 61-94
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.65 50.0 3.85e-01 100.0% 34.7%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 49.0 3.33e-01 85.3% 22.1%
6kguA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.63 46.0 3.61e-01 85.3% 37.2%
2dj6B00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.60 44.0 3.14e-01 85.3% 73.9%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 3.05e-01 91.2% 23.8%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 3.34e-01 85.3% 42.7%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 41.0 3.03e-01 91.2% 24.6%
2if7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.25e-01 88.2% 28.8%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.57 44.0 3.35e-01 85.3% 89.0%
3e1tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.75e-01 100.0% 41.0%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 2.88e-01 85.3% 24.2%
2p38A01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.18e-01 88.2% 52.2%
1b66A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.53 42.0 2.95e-01 88.2% 67.4%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.53 40.0 3.51e-01 91.2% 59.6%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 2.90e-01 91.2% 42.2%
1mjtA02 3.90.440.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase;Heme Domain; Chain A, domain 2 › Nitric Oxide Synthase;Heme Domain;Chain A domain 2 0.51 38.0 2.99e-01 100.0% 65.3%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.51 36.0 2.19e-01 88.2% 9.3%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 37.0 2.24e-01 100.0% 53.8%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.50 37.0 2.53e-01 100.0% 60.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3240986 331.18.1.7 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › DUF3557 0.68 52.0 3.73e-01 88.2% 30.9%
3241930 881.1.1.20 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3557 0.63 49.0 3.50e-01 91.2% 31.7%
3586469 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.60 44.0 3.52e-01 91.2% 36.5%
4074446 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.58 42.0 3.04e-01 91.2% 23.1%
3930706 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.58 42.0 3.39e-01 91.2% 50.6%
4053572 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.57 40.0 2.94e-01 91.2% 23.1%
3946613 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.56 42.0 2.83e-01 100.0% 76.2%
3299665 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.56 42.0 2.54e-01 88.2% 10.9%
3927256 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.56 46.0 2.86e-01 100.0% 18.6%
3940255 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.56 44.0 2.76e-01 97.1% 18.6%
3710240 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.55 37.0 2.29e-01 91.2% 11.8%
3919034 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 41.0 2.56e-01 97.1% 35.1%
4074420 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.55 40.0 2.92e-01 88.2% 71.7%
4240596 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.54 43.0 3.46e-01 100.0% 45.0%
5027131 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 41.0 3.58e-01 91.2% 73.3%
4448587 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 42.0 3.04e-01 100.0% 72.0%
5000055 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.54 45.0 2.60e-01 100.0% 52.0%
3278414 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 39.0 2.30e-01 100.0% 17.9%
3833162 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.54 44.0 2.51e-01 100.0% 42.4%
None — 0.54 44.0 2.48e-01 100.0% 39.5%
4440924 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.53 41.0 2.42e-01 100.0% 23.6%
None — 0.53 43.0 2.53e-01 100.0% 29.1%
4976291 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.52 39.0 2.30e-01 100.0% 50.9%
4942524 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 44.0 2.53e-01 100.0% 49.4%
3933159 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.41e-01 100.0% 10.0%
4464562 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.51 35.0 3.38e-01 88.2% 60.0%
3278795 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 37.0 2.22e-01 100.0% 31.1%