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QDP52174.1

Arc-Vir

MK892597__QDP52174.1__Unbinned2902contig1001-16__00017

Identity

Accession:
MK892597 ↗
Protein ID:
QDP52174.1 ↗
Kingdom:
archaea

Quality

90.0 mean pLDDT

Taxonomy

Prokaryotic_dsDNA_virus_sp.

TaxID: 2591644

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-143
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 31.5 2.10e-07 68.5% 97.9%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.74 62.0 5.91e-01 93.2% 78.3%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.72 66.0 5.23e-01 100.0% 89.4%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 44.0 4.44e-01 76.7% 63.5%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.67 52.0 5.60e-01 100.0% 98.4%
3o58V00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.67 49.0 5.30e-01 100.0% 96.6%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 45.0 3.70e-01 86.3% 41.5%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 43.0 3.99e-01 84.9% 57.4%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 37.0 4.16e-01 74.0% 81.5%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.58 41.0 3.74e-01 74.0% 69.4%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.57 42.0 3.92e-01 80.8% 68.1%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.56 43.0 4.25e-01 100.0% 76.9%
2p0sB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 32.0 2.79e-01 93.2% 39.6%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.52 39.0 3.99e-01 82.2% 94.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016552 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.86 64.0 5.48e-01 83.6% 51.8%
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.85 71.0 6.67e-01 90.4% 75.3%
4941657 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.85 69.0 6.86e-01 90.4% 84.0%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.85 68.0 6.60e-01 89.0% 77.5%
3372361 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 46.0 6.08e-01 72.6% 100.0%
None — 0.83 70.0 5.46e-01 90.4% 67.6%
3286658 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.77 69.0 5.59e-01 95.9% 66.2%
3602299 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.77 69.0 5.42e-01 98.6% 53.3%
5034882 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.77 46.0 5.80e-01 72.6% 100.0%
4951302 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 55.0 5.86e-01 75.3% 87.7%
185780 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 64.0 5.81e-01 98.6% 69.1%
2991844 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.75 64.0 5.54e-01 91.8% 70.6%
4965229 377.1.1.133 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 0.75 49.0 5.79e-01 79.5% 98.0%
5036295 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.74 51.0 5.68e-01 97.3% 94.5%
3386505 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 63.0 5.07e-01 91.8% 57.0%
5082962 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 59.0 5.08e-01 87.7% 56.4%
5017772 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 62.0 5.63e-01 94.5% 80.0%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 66.0 5.20e-01 100.0% 89.4%
3300469 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.71 42.0 4.92e-01 79.5% 86.0%
4979945 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.71 64.0 5.27e-01 98.6% 64.0%
5080395 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.71 59.0 5.07e-01 91.8% 80.9%
4966035 376.1.3.98 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 0.70 47.0 5.10e-01 75.3% 83.3%
3745376 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.70 44.0 4.43e-01 76.7% 62.7%
4938104 378.1.1.20 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.69 58.0 4.59e-01 89.0% 57.9%
4670027 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 52.0 5.28e-01 98.6% 82.9%
3411509 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 42.0 5.11e-01 79.5% 100.0%
1291965 378.1.1.16 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DraIII 0.67 58.0 4.18e-01 95.9% 41.8%
3361724 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.67 49.0 4.63e-01 100.0% 64.4%
4023822 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.66 52.0 4.06e-01 98.6% 40.7%
3680502 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.66 52.0 4.15e-01 98.6% 43.6%
1442743 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.66 51.0 5.45e-01 100.0% 98.4%
3499880 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 51.0 4.28e-01 100.0% 49.6%
2878975 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.65 51.0 5.09e-01 100.0% 81.6%
3731209 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.65 51.0 4.62e-01 100.0% 62.0%
3413090 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 50.0 4.78e-01 82.2% 100.0%
4941505 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 45.0 4.78e-01 72.6% 86.2%
3937349 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 49.0 3.08e-01 80.8% 20.0%
5050861 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.63 45.0 4.17e-01 74.0% 68.9%
3402914 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 54.0 5.25e-01 91.8% 100.0%
4943668 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 45.0 4.12e-01 74.0% 68.9%
3714738 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.62 50.0 4.30e-01 98.6% 54.2%
3611182 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.62 50.0 4.93e-01 98.6% 81.2%
5024194 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.62 44.0 4.42e-01 74.0% 80.0%
5076107 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.62 44.0 4.27e-01 74.0% 77.5%
5049855 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 39.0 4.22e-01 83.6% 78.3%
4946781 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 35.0 4.10e-01 71.2% 88.9%
4096542 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.61 43.0 4.78e-01 91.8% 98.2%
3438467 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 42.0 3.90e-01 79.5% 58.9%
3402915 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 53.0 4.79e-01 98.6% 97.0%
3307915 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.59 44.0 4.66e-01 78.1% 87.7%
3184841 376.1.1.102 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 0.59 45.0 3.59e-01 80.8% 53.6%
8214 377.4.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR 0.57 42.0 3.92e-01 80.8% 68.1%
3590662 377.4.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR 0.56 43.0 4.08e-01 83.6% 70.0%
5074886 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 41.0 4.24e-01 78.1% 95.7%
3545729 376.1.1.95 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RH_dom 0.54 41.0 4.07e-01 79.5% 92.0%
D2 medium residues 8-70
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478669 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.64 35.0 2.62e-01 90.5% 20.6%
3678661 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.58 44.0 2.63e-01 85.7% 23.1%