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QDP52204.1
Arc-VirMK892597__QDP52204.1__Unbinned2902contig1001-46__00047
Identity
- Accession:
- MK892597 ↗
- Protein ID:
- QDP52204.1 ↗
- Kingdom:
- archaea
Quality
97.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-126
Domain cluster:
rep: NC_055840.1__YP_010107121.1__KNU98_gp022__00087__D316-449
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05951.19 best | Peptidase_M15_2 | 29.3 | 9.50e-07 | 89.2% | 52.3% |
| PF08291.17 | Peptidase_M15_3 | 53.9 | 2.50e-14 | 86.3% | 75.0% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lbuA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.82 | 74.0 | 6.73e-01 | 100.0% | 74.4% |
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.80 | 67.0 | 6.02e-01 | 87.3% | 85.7% |
| 4mphA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.74 | 67.0 | 5.46e-01 | 97.1% | 72.9% |
| 5hnmC00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.73 | 66.0 | 5.40e-01 | 97.1% | 80.9% |
| 2z1eA02 | 3.90.650.10 | Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain | 0.68 | 52.0 | 4.35e-01 | 80.4% | 66.7% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.67 | 45.0 | 5.20e-01 | 94.1% | 98.6% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.67 | 49.0 | 5.46e-01 | 90.2% | 98.7% |
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.66 | 44.0 | 3.60e-01 | 84.3% | 37.2% |
| 2zzeA04 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.62 | 47.0 | 4.84e-01 | 89.2% | 85.3% |
| 3zx4A02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.62 | 48.0 | 5.15e-01 | 87.3% | 96.6% |
| 6c6uN00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.58 | 41.0 | 4.21e-01 | 80.4% | 76.5% |
| 3lpmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 44.0 | 3.48e-01 | 82.4% | 78.1% |
| 2ghpA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 38.0 | 4.18e-01 | 77.5% | 85.4% |
| 3ocjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 39.0 | 2.82e-01 | 70.6% | 67.0% |
| 2zqeA00 | 3.30.1370.110 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.57 | 38.0 | 4.26e-01 | 76.5% | 87.5% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 45.0 | 3.66e-01 | 86.3% | 81.7% |
| 1v4pC01 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.56 | 46.0 | 4.56e-01 | 92.2% | 90.7% |
| 3islA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.76e-01 | 96.1% | 61.7% |
| 1vjoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 40.0 | 3.71e-01 | 96.1% | 60.3% |
| 2ch1A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 38.0 | 3.48e-01 | 92.2% | 54.7% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 3.48e-01 | 89.2% | 50.0% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 4.18e-01 | 81.4% | 100.0% |
| 2bkwA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 40.0 | 3.78e-01 | 96.1% | 68.3% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.52 | 38.0 | 4.24e-01 | 85.3% | 100.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018092 | 307.1.1.5 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 | 0.88 | 76.0 | 6.07e-01 | 100.0% | 49.7% |
| 5081052 | 307.1.1.5 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 | 0.84 | 78.0 | 6.82e-01 | 99.0% | 78.6% |
| 5588 | 307.1.1.5 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 | 0.82 | 74.0 | 6.71e-01 | 100.0% | 73.8% |
| 3942276 | 307.1.1.8 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_2 | 0.79 | 70.0 | 6.15e-01 | 98.0% | 66.2% |
| 4962382 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.73 | 47.0 | 4.66e-01 | 88.2% | 61.8% |
| 3589629 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.71 | 65.0 | 5.08e-01 | 98.0% | 77.4% |
| 3603763 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.70 | 45.0 | 4.76e-01 | 81.4% | 73.3% |
| 4999898 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 47.0 | 5.01e-01 | 80.4% | 80.0% |
| 5065185 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 48.0 | 5.12e-01 | 84.3% | 82.2% |
| 4113237 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.67 | 45.0 | 4.70e-01 | 84.3% | 73.7% |
| 172962 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.67 | 44.0 | 4.34e-01 | 81.4% | 63.2% |
| 4497605 | 2003.1.5.54 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 | 0.65 | 47.0 | 3.32e-01 | 74.5% | 70.1% |
| 4012898 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.65 | 40.0 | 4.13e-01 | 79.4% | 64.0% |
| 3602264 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.64 | 43.0 | 4.70e-01 | 87.3% | 83.5% |
| None | — | 0.62 | 45.0 | 3.29e-01 | 74.5% | 79.6% | |
| 3605335 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.62 | 51.0 | 4.94e-01 | 88.2% | 95.7% |
| 4011125 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 39.0 | 3.80e-01 | 96.1% | 59.1% |
| 3410614 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.61 | 39.0 | 3.89e-01 | 83.3% | 62.9% |
| 4028765 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 38.0 | 4.26e-01 | 76.5% | 85.3% |
| 4993809 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.59 | 45.0 | 4.59e-01 | 89.2% | 82.0% |
| 3679905 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.59 | 39.0 | 3.72e-01 | 79.4% | 59.1% |
| 3780948 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.58 | 42.0 | 4.28e-01 | 89.2% | 76.0% |
| 4357374 | 320.2.1.1 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 | 0.58 | 37.0 | 4.36e-01 | 78.4% | 100.0% |
| 3474429 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 41.0 | 4.06e-01 | 84.3% | 68.2% |
| 3597859 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.57 | 40.0 | 3.82e-01 | 84.3% | 61.7% |
| 4583415 | 320.2.1.1 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 | 0.57 | 36.0 | 4.11e-01 | 78.4% | 86.7% |
| 2849954 | 320.2.1.1 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 | 0.57 | 36.0 | 4.06e-01 | 76.5% | 84.2% |
| 3716207 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 43.0 | 3.09e-01 | 80.4% | 97.8% |
| 3346061 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 42.0 | 2.97e-01 | 80.4% | 72.2% |
| 3190610 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.55 | 42.0 | 4.08e-01 | 80.4% | 72.7% |
| 4669669 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 45.0 | 4.38e-01 | 87.3% | 81.8% |
| 3457072 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.54 | 42.0 | 3.79e-01 | 81.4% | 70.7% |
| 3405387 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 29.0 | 3.74e-01 | 89.2% | 94.5% |
| 2794451 | 312.1.1.13 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › Reovirus_L2_GTase | 0.54 | 47.0 | 3.60e-01 | 97.1% | 52.0% |
| 5012958 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 44.0 | 4.10e-01 | 89.2% | 87.7% |
| 4979991 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 38.0 | 3.85e-01 | 87.3% | 76.0% |
| 1192654 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 37.0 | 3.56e-01 | 92.2% | 61.3% |
| 3730151 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 39.0 | 3.75e-01 | 96.1% | 69.2% |
| 3272746 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 38.0 | 3.60e-01 | 90.2% | 65.0% |
| 3497072 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.51 | 38.0 | 3.70e-01 | 81.4% | 70.9% |