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QDP61630.1

Arc-Vir

MK892760__QDP61630.1__Unbinned8261contig1001-3__00004

Identity

Accession:
MK892760 ↗
Protein ID:
QDP61630.1 ↗
Kingdom:
archaea

Quality

60.4 mean pLDDT

Taxonomy

TaxID: 2591644

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 212-328_432-475
PDB
D2 medium residues 329-431
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c0gA02 1.20.1150.12 Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain 0.81 46.0 4.64e-01 86.4% 55.7%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.80 36.0 5.26e-01 100.0% 100.0%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 41.0 5.15e-01 86.4% 100.0%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 46.0 4.77e-01 79.6% 75.3%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.61 38.0 4.62e-01 100.0% 98.5%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.59 50.0 4.17e-01 93.2% 71.0%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 45.0 4.06e-01 82.5% 92.4%
5zbqA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 45.0 3.30e-01 83.5% 35.0%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 45.0 3.91e-01 82.5% 84.4%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.57 50.0 4.72e-01 100.0% 82.0%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 44.0 3.24e-01 83.5% 35.9%
2y8nA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.56 44.0 2.59e-01 84.5% 44.2%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.56 42.0 4.52e-01 98.1% 95.4%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 49.0 4.32e-01 100.0% 66.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.73e-01 100.0% 69.9%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 49.0 4.37e-01 99.0% 77.8%
8amzT01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 42.0 3.16e-01 84.5% 42.8%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.54 36.0 4.06e-01 85.4% 93.4%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 43.0 3.15e-01 85.4% 40.4%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.54 26.0 3.37e-01 89.3% 82.5%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 42.0 3.18e-01 84.5% 38.3%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 47.0 4.62e-01 100.0% 91.9%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 48.0 4.15e-01 100.0% 74.8%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 48.0 4.39e-01 100.0% 80.0%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.53 48.0 3.77e-01 100.0% 79.8%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 46.0 4.06e-01 100.0% 77.7%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 36.0 3.50e-01 92.2% 62.7%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.52 44.0 3.51e-01 94.2% 61.4%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 35.0 3.81e-01 100.0% 84.5%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 39.0 3.79e-01 84.5% 91.0%
2mmbA00 4.10.640.20 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › 0.51 37.0 3.72e-01 98.1% 73.8%
3ejjB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 39.0 3.50e-01 96.1% 57.9%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 44.0 3.65e-01 100.0% 88.3%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.50 45.0 3.71e-01 99.0% 59.1%
1b68A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.50 38.0 3.53e-01 83.5% 75.4%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.51e-01 78.6% 84.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3197460 6132.1.1.7 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › efThoc1 0.85 37.0 5.04e-01 100.0% 78.2%
3258520 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.75 35.0 4.84e-01 100.0% 97.8%
3847975 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.66 46.0 4.76e-01 70.9% 96.8%
3512636 3930.1.1.6 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Dicer_PBD 0.66 55.0 5.27e-01 100.0% 79.1%
3549954 3930.1.1.0 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.65 54.0 3.88e-01 100.0% 31.0%
3409326 3930.1.1.6 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Dicer_PBD 0.62 56.0 5.10e-01 100.0% 77.8%
3222508 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.61 47.0 3.40e-01 82.5% 39.0%
3229713 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.60 50.0 4.47e-01 91.3% 100.0%
3696217 109.4.1.1434 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC9-Trs120, PF26251 0.59 41.0 2.98e-01 70.9% 54.3%
3487134 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.57 39.0 4.16e-01 95.1% 81.1%
3917696 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 44.0 3.54e-01 81.6% 56.5%
3283133 610.4.1.0 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.57 47.0 4.63e-01 90.3% 100.0%
3392936 7542.1.1.0 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.57 48.0 3.98e-01 92.2% 100.0%
3882687 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 46.0 3.23e-01 86.4% 64.2%
3203044 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.57 44.0 4.08e-01 83.5% 91.1%
3725391 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 3.12e-01 92.2% 31.8%
4054419 604.12.1.78 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › FUSC 0.56 51.0 4.35e-01 100.0% 84.8%
3714022 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.56 30.0 3.65e-01 99.0% 86.7%
4575627 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.56 48.0 3.93e-01 93.2% 99.5%
3610044 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.56 47.0 3.88e-01 92.2% 100.0%
3484828 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.55 48.0 4.20e-01 96.1% 77.4%
3595048 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 48.0 3.60e-01 100.0% 72.6%
3612308 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.54 45.0 4.45e-01 92.2% 90.3%
3611437 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 42.0 3.63e-01 100.0% 53.1%
3731940 633.23.1.12 alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.54 47.0 3.52e-01 96.1% 95.3%
3670742 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 47.0 4.49e-01 95.1% 83.3%
3655741 7542.1.1.0 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.53 46.0 4.34e-01 93.2% 80.8%
5055384 3281.1.2.3 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › Proton_antipo_M 0.53 46.0 3.35e-01 100.0% 58.2%
4281574 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.53 37.0 4.10e-01 91.3% 93.8%
3929962 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.53 37.0 2.79e-01 71.8% 83.9%
4200968 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.53 38.0 4.11e-01 90.3% 91.8%
3296508 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 46.0 4.36e-01 95.1% 81.3%
3474413 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 42.0 2.92e-01 88.3% 90.6%
3427458 109.4.1.1659 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nodulin_N 0.52 38.0 3.39e-01 95.1% 53.8%
3282576 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.52 46.0 3.90e-01 100.0% 61.7%
3660749 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.52 47.0 4.38e-01 99.0% 100.0%
3338006 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.52 44.0 4.26e-01 95.1% 86.7%
3773033 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 42.0 2.94e-01 88.3% 52.2%
2576218 150.1.1.84 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › IMEF_Flp 0.52 46.0 4.19e-01 99.0% 90.8%
3475431 133.1.1.0 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.52 45.0 3.52e-01 100.0% 77.9%
3734132 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.51 41.0 2.89e-01 84.5% 27.9%
3938116 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 40.0 3.05e-01 83.5% 42.7%
5057313 3352.1.1.2 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 0.51 38.0 2.67e-01 81.6% 99.0%
3166518 109.4.1.307 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 0.51 41.0 2.65e-01 88.3% 62.8%
4996482 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.50 44.0 3.87e-01 98.1% 75.5%
D3 medium residues 648-712
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lm4A01 1.10.150.250 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase 0.71 48.0 4.31e-01 70.8% 56.5%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.62 43.0 3.74e-01 72.3% 64.9%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 42.0 3.63e-01 72.3% 62.9%
3i9yA00 1.20.58.920 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 39.0 2.73e-01 76.9% 84.3%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.54 36.0 2.55e-01 73.8% 21.3%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.51 36.0 2.93e-01 75.4% 83.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033271 4125.1.1.0 alpha superhelices › BH3980-like › BH3980-like › BH3980-like 0.76 51.0 4.41e-01 70.8% 59.0%
3250261 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.74 53.0 4.74e-01 75.4% 80.0%
3673391 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.74 56.0 5.20e-01 80.0% 92.5%
4861051 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.73 55.0 5.10e-01 80.0% 90.1%
3591726 1128.1.1.5 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_1 0.72 55.0 5.16e-01 81.5% 97.5%
3932008 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.72 52.0 5.00e-01 76.9% 96.0%
3265419 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.70 48.0 4.50e-01 70.8% 88.7%
4947492 1030.1.1.0 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.55 39.0 3.13e-01 75.4% 57.6%
4283506 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.54 38.0 3.43e-01 73.8% 83.3%
3481547 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.52 36.0 2.72e-01 76.9% 30.7%
4121730 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.51 39.0 3.39e-01 81.5% 84.0%