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MK893987.1__QDF14328.1__X__00031
Bact-VirMK893987.1__QDF14328.1__X__00031
Identity
- Accession:
- MK893987 ↗
- Kingdom:
- phage
Quality
62.5
mean pLDDT
Taxonomy
TaxID: 2590894
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-77
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04531.19 best | Phage_holin_1 | 75.1 | 6.90e-21 | 100.0% | 91.5% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 51.0 | 5.41e-01 | 75.3% | 80.0% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 53.0 | 5.47e-01 | 91.8% | 85.3% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 48.0 | 5.48e-01 | 72.6% | 100.0% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.68 | 47.0 | 4.80e-01 | 94.5% | 74.3% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.67 | 50.0 | 4.45e-01 | 90.4% | 54.6% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 48.0 | 4.93e-01 | 89.0% | 83.8% |
| 3hl1A02 | 6.10.140.1530 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 49.0 | 5.18e-01 | 80.8% | 89.2% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.63 | 45.0 | 4.49e-01 | 89.0% | 72.4% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 43.0 | 4.74e-01 | 90.4% | 92.9% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.62 | 50.0 | 5.19e-01 | 93.2% | 92.5% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 50.0 | 4.91e-01 | 95.9% | 81.0% |
| 2oyhA00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 46.0 | 4.83e-01 | 83.6% | 89.1% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 50.0 | 3.97e-01 | 97.3% | 43.5% |
| 1b04A03 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 41.0 | 4.41e-01 | 95.9% | 80.6% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 45.0 | 4.93e-01 | 91.8% | 96.7% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 49.0 | 3.48e-01 | 97.3% | 27.5% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.60 | 45.0 | 4.64e-01 | 95.9% | 88.1% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.60 | 46.0 | 3.82e-01 | 84.9% | 45.9% |
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 44.0 | 4.49e-01 | 86.3% | 80.0% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 53.0 | 5.31e-01 | 97.3% | 97.3% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.59 | 51.0 | 3.73e-01 | 97.3% | 88.5% |
| 2qkwA00 | 1.20.1270.140 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto | 0.59 | 50.0 | 4.61e-01 | 100.0% | 75.2% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.58 | 45.0 | 4.24e-01 | 95.9% | 67.4% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.58 | 50.0 | 4.73e-01 | 97.3% | 82.0% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 40.0 | 4.42e-01 | 82.2% | 96.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 49.0 | 4.87e-01 | 95.9% | 92.0% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.57 | 47.0 | 4.84e-01 | 93.2% | 93.0% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 44.0 | 4.49e-01 | 97.3% | 88.7% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.56 | 40.0 | 4.02e-01 | 83.6% | 74.7% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 48.0 | 4.14e-01 | 95.9% | 63.7% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 48.0 | 3.50e-01 | 100.0% | 56.7% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 38.0 | 4.13e-01 | 95.9% | 98.3% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.52 | 44.0 | 4.54e-01 | 97.3% | 100.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3477166 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.72 | 50.0 | 4.19e-01 | 76.7% | 44.2% |
| 5017265 | 5059.1.1.7 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › DMT_YdcZ | 0.69 | 48.0 | 3.85e-01 | 75.3% | 36.6% |
| 3491310 | 3826.1.1.67 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Med10 | 0.69 | 50.0 | 5.03e-01 | 95.9% | 76.0% |
| 3588718 | 633.19.1.0 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain | 0.69 | 49.0 | 4.89e-01 | 78.1% | 73.3% |
| 3264401 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.67 | 49.0 | 4.93e-01 | 94.5% | 76.0% |
| 3290070 | 5011.1.1.0 ↗ | extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa | 0.66 | 47.0 | 5.34e-01 | 87.7% | 100.0% |
| 3195005 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 46.0 | 4.34e-01 | 78.1% | 60.0% |
| 4979784 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.63 | 48.0 | 3.46e-01 | 84.9% | 96.1% |
| 4949876 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 49.0 | 5.18e-01 | 93.2% | 96.9% |
| 3282873 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.62 | 49.0 | 5.18e-01 | 94.5% | 98.4% |
| 3998454 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.62 | 53.0 | 4.85e-01 | 97.3% | 72.6% |
| None | — | 0.62 | 52.0 | 3.43e-01 | 93.2% | 30.0% | |
| 3270180 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.61 | 43.0 | 4.11e-01 | 75.3% | 68.9% |
| 3424167 | 3826.1.1.84 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 | 0.61 | 47.0 | 4.57e-01 | 89.0% | 73.8% |
| 3896730 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 53.0 | 4.31e-01 | 97.3% | 51.1% |
| 3391978 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.60 | 44.0 | 4.41e-01 | 82.2% | 76.0% |
| 3414817 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.60 | 47.0 | 3.18e-01 | 89.0% | 21.4% |
| 3527000 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.59 | 45.0 | 4.07e-01 | 97.3% | 59.0% |
| 3408532 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.59 | 51.0 | 3.91e-01 | 97.3% | 62.4% |
| 4122452 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 44.0 | 4.44e-01 | 97.3% | 81.3% |
| 5051528 | 2004.1.1.85 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase | 0.57 | 48.0 | 3.14e-01 | 93.2% | 27.3% |
| 3623829 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.57 | 46.0 | 3.48e-01 | 90.4% | 64.2% |
| 5019279 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.57 | 49.0 | 3.38e-01 | 97.3% | 28.5% |
| 3731062 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.57 | 46.0 | 4.48e-01 | 98.6% | 80.0% |
| None | — | 0.55 | 48.0 | 3.15e-01 | 100.0% | 36.8% | |
| 4257141 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.54 | 37.0 | 2.79e-01 | 80.8% | 26.5% |
| 4489485 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 44.0 | 3.29e-01 | 97.3% | 34.4% |
| 4076872 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 45.0 | 2.98e-01 | 98.6% | 37.1% |
| 3857330 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.53 | 47.0 | 3.62e-01 | 97.3% | 57.5% |
| 3785779 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.53 | 45.0 | 3.19e-01 | 98.6% | 31.6% |
| 3461004 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.52 | 43.0 | 4.34e-01 | 89.0% | 88.0% |
| 3606768 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 2.84e-01 | 93.2% | 28.6% |