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MK893987.1__QDF14349.1__X__00052
Bact-VirMK893987.1__QDF14349.1__X__00052
Identity
- Accession:
- MK893987 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Taxonomy
TaxID: 2590894
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-118
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07463.17 best | NUMOD4 | 57.0 | 2.50e-15 | 48.3% | 100.0% |
| PF13392.13 | HNH_3 | 25.8 | 8.80e-06 | 39.0% | 60.9% |
D2
medium
residues 119-185
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ktbA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 40.0 | 3.56e-01 | 86.6% | 45.1% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 41.0 | 3.76e-01 | 89.6% | 48.8% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 41.0 | 3.52e-01 | 89.6% | 41.5% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.64 | 41.0 | 4.04e-01 | 88.1% | 61.1% |
| 1a0iA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.64 | 41.0 | 3.80e-01 | 88.1% | 53.0% |
| 2kkcA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 44.0 | 3.92e-01 | 79.1% | 97.0% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.60 | 40.0 | 4.03e-01 | 89.6% | 69.7% |
| 1uasA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 34.0 | 3.15e-01 | 86.6% | 43.2% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 46.0 | 3.87e-01 | 86.6% | 85.5% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 3.54e-01 | 89.6% | 48.5% |
| 2jqzA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.58 | 45.0 | 3.74e-01 | 88.1% | 98.5% |
| 2r7kA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.58 | 41.0 | 4.29e-01 | 88.1% | 82.0% |
| 1grjA02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.57 | 46.0 | 4.42e-01 | 88.1% | 96.1% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 36.0 | 3.30e-01 | 94.0% | 47.8% |
| 2pn0A02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.56 | 43.0 | 4.14e-01 | 88.1% | 85.4% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 37.0 | 4.25e-01 | 88.1% | 96.0% |
| 2hn1A01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.54 | 40.0 | 3.28e-01 | 83.6% | 81.7% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 36.0 | 4.11e-01 | 88.1% | 95.9% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.53 | 39.0 | 3.16e-01 | 89.6% | 42.6% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 39.0 | 3.55e-01 | 85.1% | 58.7% |
| 2g5dA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.52 | 46.0 | 3.31e-01 | 100.0% | 77.1% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 33.0 | 2.56e-01 | 89.6% | 27.5% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.51 | 40.0 | 3.23e-01 | 88.1% | 45.1% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 43.0 | 3.66e-01 | 92.5% | 90.8% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.51 | 36.0 | 3.09e-01 | 89.6% | 46.2% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.51 | 39.0 | 3.18e-01 | 89.6% | 78.1% |
| 3p9dG01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.51 | 44.0 | 3.04e-01 | 100.0% | 82.6% |
| 3ujzA03 | 2.60.20.40 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.51 | 42.0 | 3.72e-01 | 94.0% | 96.0% |
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.50 | 38.0 | 2.75e-01 | 92.5% | 26.1% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 37.0 | 2.92e-01 | 89.6% | 35.8% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.50 | 39.0 | 3.21e-01 | 91.0% | 46.7% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059022 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.71 | 42.0 | 3.76e-01 | 89.6% | 44.4% |
| 5068882 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 42.0 | 3.98e-01 | 89.6% | 51.2% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.69 | 41.0 | 4.67e-01 | 88.1% | 80.0% |
| 5041001 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.68 | 41.0 | 3.88e-01 | 89.6% | 51.2% |
| 5055044 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.66 | 40.0 | 3.91e-01 | 89.6% | 56.0% |
| 3232277 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 42.0 | 3.37e-01 | 89.6% | 36.7% |
| 3259531 | 11.1.4.16 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw | 0.65 | 41.0 | 3.46e-01 | 91.0% | 39.1% |
| 3717125 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.65 | 53.0 | 4.33e-01 | 91.0% | 95.2% |
| 3685786 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 38.0 | 2.72e-01 | 91.0% | 21.6% |
| 4618815 | 73.1.1.16 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Dicty_REP | 0.63 | 51.0 | 4.25e-01 | 89.6% | 100.0% |
| 3400352 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.63 | 40.0 | 4.36e-01 | 89.6% | 79.6% |
| 3518250 | 822.2.1.0 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like | 0.63 | 35.0 | 4.21e-01 | 88.1% | 90.0% |
| 3389022 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.62 | 39.0 | 4.41e-01 | 88.1% | 86.0% |
| 3969578 | 3268.1.1.0 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase | 0.61 | 43.0 | 4.70e-01 | 100.0% | 92.7% |
| 3385376 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.60 | 45.0 | 3.69e-01 | 98.5% | 43.2% |
| 5062240 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.60 | 37.0 | 3.44e-01 | 89.6% | 49.4% |
| 5047755 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.60 | 48.0 | 3.79e-01 | 100.0% | 42.1% |
| 5036380 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.60 | 46.0 | 4.13e-01 | 86.6% | 95.0% |
| 3999432 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.59 | 47.0 | 3.50e-01 | 88.1% | 81.7% |
| 185296 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.58 | 42.0 | 2.92e-01 | 88.1% | 25.6% |
| 3932150 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 44.0 | 4.25e-01 | 97.0% | 73.3% |
| 3956578 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.57 | 50.0 | 3.82e-01 | 100.0% | 42.6% |
| 3994924 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.56 | 44.0 | 3.48e-01 | 88.1% | 96.7% |
| 4930160 | 1.1.2.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central | 0.55 | 33.0 | 2.73e-01 | 89.6% | 28.9% |
| 3308035 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 41.0 | 3.40e-01 | 86.6% | 93.6% |
| 5082626 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.54 | 48.0 | 3.58e-01 | 100.0% | 77.6% |
| 3243876 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 45.0 | 4.03e-01 | 100.0% | 84.8% |
| 3180388 | 3868.1.1.1 ↗ | a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 | 0.54 | 43.0 | 3.19e-01 | 91.0% | 34.8% |
| 3242230 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 45.0 | 3.08e-01 | 89.6% | 28.8% |
| 3440667 | 1.1.2.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 | 0.54 | 41.0 | 4.18e-01 | 89.6% | 83.1% |
| 4954188 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.53 | 40.0 | 3.18e-01 | 83.6% | 73.2% |
| 3395520 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.53 | 38.0 | 4.03e-01 | 88.1% | 85.0% |
| 3274993 | 10.12.1.52 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 | 0.53 | 35.0 | 2.20e-01 | 89.6% | 11.7% |
| 5002387 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.52 | 41.0 | 2.80e-01 | 88.1% | 43.9% |
| 5032187 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 39.0 | 4.25e-01 | 86.6% | 98.2% |
| 3585357 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 45.0 | 3.95e-01 | 100.0% | 76.0% |
| 3978658 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 2.56e-01 | 89.6% | 26.7% |
| 3176457 | 4139.1.1.1 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 | 0.50 | 41.0 | 3.77e-01 | 92.5% | 96.7% |