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MK893987.1__QDF14356.1__X__00059
Bact-VirMK893987.1__QDF14356.1__X__00059
Identity
- Accession:
- MK893987 ↗
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Taxonomy
TaxID: 2590894
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-113
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.73 | 37.0 | 4.28e-01 | 83.0% | 66.7% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 39.0 | 3.99e-01 | 81.2% | 54.1% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 49.0 | 4.45e-01 | 79.5% | 70.0% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.64 | 46.0 | 4.55e-01 | 88.4% | 70.2% |
| 4g79A00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.63 | 46.0 | 4.30e-01 | 74.1% | 94.8% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.62 | 31.0 | 4.10e-01 | 75.0% | 93.0% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 42.0 | 3.80e-01 | 73.2% | 79.0% |
| 6x05A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 48.0 | 3.30e-01 | 86.6% | 28.4% |
| 2wnhA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.59 | 43.0 | 2.91e-01 | 75.9% | 94.2% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.58 | 47.0 | 4.41e-01 | 85.7% | 77.2% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.57 | 44.0 | 3.48e-01 | 80.4% | 39.0% |
| 3eliA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 47.0 | 4.30e-01 | 87.5% | 85.4% |
| 3el6A00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.56 | 41.0 | 3.10e-01 | 75.9% | 76.8% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.56 | 43.0 | 3.69e-01 | 80.4% | 89.4% |
| 2pwwA00 | 3.30.310.100 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like | 0.56 | 43.0 | 4.35e-01 | 81.2% | 89.6% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 35.0 | 3.39e-01 | 90.2% | 53.7% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 44.0 | 4.06e-01 | 84.8% | 86.5% |
| 1c16A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 43.0 | 3.82e-01 | 84.8% | 98.2% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 41.0 | 3.17e-01 | 79.5% | 75.7% |
| 5o16B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.54 | 40.0 | 2.99e-01 | 75.9% | 77.2% |
| 4pswB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 3.17e-01 | 92.9% | 35.2% |
| 6obtA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 40.0 | 2.97e-01 | 78.6% | 74.3% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 44.0 | 3.18e-01 | 89.3% | 45.4% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.52 | 42.0 | 4.09e-01 | 86.6% | 87.1% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 40.0 | 3.78e-01 | 83.9% | 82.6% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 39.0 | 3.59e-01 | 81.2% | 75.2% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 3.01e-01 | 93.8% | 46.3% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972681 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.71 | 41.0 | 4.48e-01 | 83.9% | 69.1% |
| 3828738 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.70 | 46.0 | 4.12e-01 | 90.2% | 48.4% |
| 3802860 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.68 | 40.0 | 2.86e-01 | 83.0% | 20.3% |
| 1887056 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.67 | 40.0 | 3.91e-01 | 83.9% | 54.2% |
| 3834402 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.67 | 42.0 | 2.98e-01 | 80.4% | 22.3% |
| 3432676 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.66 | 46.0 | 4.17e-01 | 75.0% | 53.4% |
| 3920557 | 4210.1.1.3 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 | 0.65 | 45.0 | 4.83e-01 | 70.5% | 86.3% |
| 4338527 | 5.1.5.145 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › eIF2A | 0.64 | 46.0 | 2.98e-01 | 73.2% | 22.8% |
| 3308552 | 11.1.1.635 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 | 0.61 | 50.0 | 4.77e-01 | 87.5% | 99.2% |
| 3730272 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.61 | 38.0 | 3.48e-01 | 82.1% | 49.3% |
| 3598679 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.61 | 50.0 | 4.13e-01 | 87.5% | 76.8% |
| 4666593 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.61 | 42.0 | 3.79e-01 | 72.3% | 78.0% |
| 5032693 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 48.0 | 3.30e-01 | 86.6% | 39.8% |
| 3502613 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 52.0 | 3.69e-01 | 95.5% | 45.3% |
| 3272624 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.59 | 45.0 | 4.27e-01 | 79.5% | 70.0% |
| 3794870 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.59 | 44.0 | 3.94e-01 | 79.5% | 77.5% |
| 3238811 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.58 | 38.0 | 2.71e-01 | 79.5% | 23.5% |
| 3656110 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.58 | 43.0 | 2.99e-01 | 76.8% | 24.9% |
| 3819893 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.58 | 49.0 | 3.29e-01 | 92.9% | 46.8% |
| 3271615 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 44.0 | 2.96e-01 | 82.1% | 26.6% |
| 3493824 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 48.0 | 3.35e-01 | 89.3% | 41.1% |
| 4029107 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 45.0 | 3.32e-01 | 82.1% | 36.4% |
| 3897847 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.57 | 44.0 | 3.87e-01 | 82.1% | 78.7% |
| 4426077 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.57 | 41.0 | 3.74e-01 | 75.9% | 98.1% |
| 3933484 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.57 | 44.0 | 3.87e-01 | 82.1% | 77.6% |
| 3474310 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.56 | 45.0 | 4.61e-01 | 85.7% | 91.8% |
| 3797033 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 41.0 | 3.67e-01 | 87.5% | 54.8% |
| 3832530 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 48.0 | 3.40e-01 | 95.5% | 45.9% |
| 3398404 | 220.1.1.42 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › INPP5B_PH | 0.56 | 44.0 | 4.16e-01 | 86.6% | 82.9% |
| 3716442 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 3.11e-01 | 89.3% | 31.0% |
| 3212364 | 5.1.5.27 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N | 0.54 | 50.0 | 3.28e-01 | 100.0% | 38.2% |
| 3583345 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.54 | 45.0 | 3.06e-01 | 92.0% | 49.5% |
| 3498392 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 43.0 | 4.28e-01 | 86.6% | 93.3% |
| 3719842 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.53 | 45.0 | 3.32e-01 | 92.0% | 66.4% |
| 3808306 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.53 | 42.0 | 3.09e-01 | 85.7% | 41.2% |
| 142888 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.53 | 44.0 | 3.18e-01 | 89.3% | 45.4% |
| 3340221 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 43.0 | 2.94e-01 | 89.3% | 46.6% |
| 4929324 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 43.0 | 3.24e-01 | 90.2% | 84.3% |
| 4091266 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.52 | 41.0 | 2.65e-01 | 89.3% | 22.2% |
| 4997740 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.52 | 42.0 | 3.95e-01 | 92.9% | 71.4% |
| 3972133 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 39.0 | 3.03e-01 | 89.3% | 37.1% |
| 3777947 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.51 | 43.0 | 2.80e-01 | 91.1% | 33.3% |
| 5057921 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 39.0 | 3.01e-01 | 84.8% | 36.7% |
| 3433328 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 43.0 | 2.99e-01 | 92.9% | 42.7% |