←Back to structures
MK893987.1__QDF14400.1__X__00103
Bact-VirMK893987.1__QDF14400.1__X__00103
Identity
- Accession:
- MK893987 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
TaxID: 2590894
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-95
Domain cluster:
rep: PP034387.1__WRW34204.1__CF1_0115__00115__D7-94
CATH (65)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 44.0 | 5.13e-01 | 87.1% | 87.9% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 44.0 | 5.17e-01 | 86.0% | 96.8% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 43.0 | 5.04e-01 | 86.0% | 93.7% |
| 2bcfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.68 | 47.0 | 3.40e-01 | 92.5% | 25.7% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 42.0 | 4.94e-01 | 86.0% | 93.7% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 49.0 | 5.32e-01 | 100.0% | 97.4% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.65 | 37.0 | 4.69e-01 | 82.8% | 100.0% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.64 | 38.0 | 4.76e-01 | 83.9% | 98.2% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 44.0 | 4.95e-01 | 91.4% | 93.1% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 37.0 | 4.56e-01 | 83.9% | 93.1% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 42.0 | 4.63e-01 | 98.9% | 87.3% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 42.0 | 4.45e-01 | 100.0% | 79.0% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.63 | 40.0 | 4.75e-01 | 89.2% | 100.0% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.62 | 36.0 | 4.21e-01 | 82.8% | 82.8% |
| 4n6tA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 48.0 | 5.11e-01 | 97.8% | 97.5% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 42.0 | 4.59e-01 | 87.1% | 86.7% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.62 | 35.0 | 4.32e-01 | 81.7% | 100.0% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 41.0 | 4.17e-01 | 79.6% | 70.8% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 55.0 | 5.16e-01 | 98.9% | 96.4% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 54.0 | 5.14e-01 | 100.0% | 92.8% |
| 3dmcA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 52.0 | 4.69e-01 | 98.9% | 90.3% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 40.0 | 3.56e-01 | 92.5% | 46.4% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 41.0 | 4.15e-01 | 77.4% | 71.4% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 51.0 | 4.50e-01 | 96.8% | 94.3% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 53.0 | 3.36e-01 | 98.9% | 47.3% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 52.0 | 4.80e-01 | 98.9% | 94.2% |
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 53.0 | 5.03e-01 | 98.9% | 97.3% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 39.0 | 4.20e-01 | 77.4% | 80.8% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 37.0 | 4.37e-01 | 72.0% | 98.3% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 39.0 | 4.60e-01 | 90.3% | 100.0% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.59 | 47.0 | 4.75e-01 | 100.0% | 88.9% |
| 3fljA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 52.0 | 4.55e-01 | 100.0% | 78.7% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 48.0 | 4.05e-01 | 91.4% | 68.9% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 52.0 | 4.78e-01 | 98.9% | 96.7% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.58 | 42.0 | 3.65e-01 | 75.3% | 84.6% |
| 2awnC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 34.0 | 4.18e-01 | 76.3% | 94.8% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 47.0 | 4.77e-01 | 88.2% | 94.7% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 48.0 | 3.94e-01 | 91.4% | 64.5% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.57 | 37.0 | 3.53e-01 | 96.8% | 54.5% |
| 4o89A02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.57 | 44.0 | 4.41e-01 | 100.0% | 83.0% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 39.0 | 4.33e-01 | 79.6% | 95.6% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 38.0 | 4.19e-01 | 78.5% | 90.1% |
| 4o8sA01 | 3.10.450.620 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain | 0.56 | 42.0 | 3.85e-01 | 86.0% | 59.2% |
| 3qc2B00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 50.0 | 3.36e-01 | 98.9% | 29.1% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.56 | 32.0 | 3.83e-01 | 76.3% | 92.9% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 36.0 | 4.04e-01 | 78.5% | 88.7% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 47.0 | 3.39e-01 | 96.8% | 83.0% |
| 1y0gA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.55 | 48.0 | 4.02e-01 | 100.0% | 92.9% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 48.0 | 4.19e-01 | 98.9% | 63.7% |
| 3rd7A00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.54 | 43.0 | 3.17e-01 | 87.1% | 94.2% |
| 5c0pA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 47.0 | 3.35e-01 | 98.9% | 31.3% |
| 2l4vA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 48.0 | 4.24e-01 | 98.9% | 69.6% |
| 2a22B00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 37.0 | 2.88e-01 | 71.0% | 49.8% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.53 | 47.0 | 4.53e-01 | 100.0% | 89.6% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.53 | 33.0 | 3.18e-01 | 77.4% | 51.8% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 38.0 | 3.58e-01 | 74.2% | 97.3% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 38.0 | 3.85e-01 | 84.9% | 75.3% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.74e-01 | 77.4% | 99.0% |
| 5gqoA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.87e-01 | 77.4% | 77.3% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.51 | 37.0 | 3.65e-01 | 76.3% | 91.2% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 45.0 | 3.76e-01 | 97.8% | 91.5% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 45.0 | 3.75e-01 | 98.9% | 70.9% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 41.0 | 2.97e-01 | 88.2% | 36.1% |
| 3zs7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 41.0 | 2.97e-01 | 88.2% | 58.1% |
| 4n4bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 44.0 | 3.08e-01 | 100.0% | 28.8% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3306779 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 44.0 | 5.15e-01 | 86.0% | 90.8% |
| 3483806 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.70 | 38.0 | 3.21e-01 | 83.9% | 32.7% |
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 43.0 | 5.01e-01 | 87.1% | 89.2% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 44.0 | 5.14e-01 | 86.0% | 92.3% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 43.0 | 5.01e-01 | 86.0% | 90.8% |
| 3608236 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 43.0 | 4.96e-01 | 86.0% | 90.8% |
| 4646762 | 3480.1.1.1 ↗ | a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 | 0.66 | 42.0 | 4.43e-01 | 74.2% | 71.8% |
| 4953412 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.65 | 42.0 | 3.85e-01 | 94.6% | 48.8% |
| 4336488 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.65 | 46.0 | 5.03e-01 | 97.8% | 98.6% |
| 3227845 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.62 | 50.0 | 3.31e-01 | 86.0% | 30.1% |
| 3781402 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.62 | 47.0 | 4.31e-01 | 91.4% | 62.5% |
| 4609098 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.61 | 45.0 | 4.06e-01 | 91.4% | 54.8% |
| 3698791 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.61 | 43.0 | 4.80e-01 | 97.8% | 98.6% |
| 1948932 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.60 | 54.0 | 5.17e-01 | 98.9% | 98.1% |
| 5039841 | 330.1.1.36 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF | 0.60 | 44.0 | 4.17e-01 | 76.3% | 86.4% |
| 4391625 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 45.0 | 4.26e-01 | 91.4% | 66.4% |
| 4457711 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.60 | 39.0 | 3.11e-01 | 71.0% | 31.3% |
| 4957034 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 54.0 | 3.59e-01 | 100.0% | 27.7% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.60 | 42.0 | 4.62e-01 | 94.6% | 98.6% |
| 4416182 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.60 | 52.0 | 5.09e-01 | 100.0% | 92.4% |
| 3602244 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 43.0 | 3.79e-01 | 77.4% | 66.0% |
| 3942438 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 44.0 | 4.17e-01 | 89.2% | 66.4% |
| 5024203 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.59 | 40.0 | 4.14e-01 | 90.3% | 73.3% |
| 4498611 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.59 | 39.0 | 3.15e-01 | 71.0% | 33.2% |
| 167841 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.59 | 35.0 | 4.15e-01 | 75.3% | 91.7% |
| 3329783 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 40.0 | 4.06e-01 | 80.6% | 69.5% |
| 3314422 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 39.0 | 4.37e-01 | 80.6% | 91.4% |
| 1281147 | 9.23.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 | 0.59 | 47.0 | 4.78e-01 | 87.1% | 94.7% |
| 3958436 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.58 | 48.0 | 3.82e-01 | 89.2% | 52.6% |
| 4586017 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.58 | 44.0 | 4.12e-01 | 91.4% | 65.2% |
| 3953070 | 243.1.1.80 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 | 0.57 | 51.0 | 4.87e-01 | 100.0% | 99.1% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 39.0 | 4.23e-01 | 81.7% | 88.0% |
| 3670595 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 38.0 | 3.87e-01 | 89.2% | 68.4% |
| 3809302 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 39.0 | 4.03e-01 | 89.2% | 76.5% |
| 3655368 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 39.0 | 4.18e-01 | 81.7% | 88.0% |
| 3420092 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 38.0 | 4.01e-01 | 80.6% | 80.0% |
| 4618633 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.56 | 32.0 | 3.82e-01 | 73.1% | 88.1% |
| 4982874 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 41.0 | 3.69e-01 | 75.3% | 90.4% |
| 4262169 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.56 | 44.0 | 4.46e-01 | 100.0% | 88.2% |
| 3976580 | 243.1.1.21 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 | 0.56 | 49.0 | 4.22e-01 | 100.0% | 83.0% |
| 3258413 | 2.1.1.111 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB | 0.56 | 40.0 | 3.53e-01 | 77.4% | 52.3% |
| 3288884 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 4.16e-01 | 82.8% | 81.9% |
| 5038973 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 49.0 | 3.30e-01 | 98.9% | 26.4% |
| 3163776 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.55 | 39.0 | 3.55e-01 | 88.2% | 53.1% |
| 3578768 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 49.0 | 3.98e-01 | 100.0% | 83.9% |
| 3749345 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 38.0 | 4.00e-01 | 87.1% | 82.5% |
| 2644388 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 48.0 | 4.35e-01 | 100.0% | 93.1% |
| 3393543 | 109.54.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 | 0.54 | 47.0 | 2.96e-01 | 96.8% | 18.3% |
| 1564338 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.54 | 47.0 | 3.35e-01 | 98.9% | 31.3% |
| 5018204 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.54 | 46.0 | 3.91e-01 | 96.8% | 84.8% |
| 5041945 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 39.0 | 3.78e-01 | 76.3% | 66.7% |
| 5053021 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.54 | 39.0 | 4.01e-01 | 100.0% | 81.1% |
| 4977257 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.54 | 42.0 | 3.11e-01 | 84.9% | 40.4% |
| 4961746 | 304.8.1.122 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N | 0.54 | 38.0 | 3.56e-01 | 74.2% | 90.4% |
| 4976921 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 45.0 | 3.12e-01 | 93.5% | 35.2% |
| 3951937 | 330.8.1.1 ↗ | a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like | 0.53 | 36.0 | 3.68e-01 | 81.7% | 71.9% |
| 3991735 | 9.1.1.49 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 | 0.53 | 46.0 | 4.31e-01 | 97.8% | 93.0% |
| 3272654 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 46.0 | 4.57e-01 | 98.9% | 100.0% |
| 5029166 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 38.0 | 4.14e-01 | 90.3% | 95.9% |
| 3738581 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 38.0 | 2.72e-01 | 75.3% | 47.6% |
| 3582457 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 39.0 | 2.65e-01 | 97.8% | 21.8% |
| 3713587 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 40.0 | 3.93e-01 | 82.8% | 88.0% |
| 4095892 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.51 | 38.0 | 3.30e-01 | 77.4% | 79.3% |
| 3895620 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.51 | 45.0 | 3.77e-01 | 98.9% | 62.4% |
| 4956928 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 42.0 | 3.31e-01 | 91.4% | 81.5% |
| 4955341 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 36.0 | 3.47e-01 | 77.4% | 64.8% |
| 4940436 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.51 | 37.0 | 3.79e-01 | 77.4% | 81.1% |
| 144571 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.51 | 45.0 | 3.71e-01 | 98.9% | 70.2% |
| 3704413 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 40.0 | 2.67e-01 | 87.1% | 23.5% |
| 3494170 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.50 | 43.0 | 3.33e-01 | 96.8% | 53.2% |
| 4984691 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.50 | 42.0 | 3.96e-01 | 94.6% | 85.0% |
D2
high
residues 99-184
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23864.2 best | DUF7222 | 34.5 | 2.90e-08 | 72.1% | 40.7% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4u2vA02 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.62 | 40.0 | 4.19e-01 | 96.5% | 71.2% |
| 6vvoE02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 50.0 | 4.80e-01 | 94.2% | 91.9% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 38.0 | 3.64e-01 | 86.0% | 57.4% |
| 2wcjA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 47.0 | 4.03e-01 | 91.9% | 87.2% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.56 | 34.0 | 3.22e-01 | 89.5% | 48.6% |
| 2v6eA02 | 1.20.1440.270 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.56 | 50.0 | 4.39e-01 | 100.0% | 76.0% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 37.0 | 4.06e-01 | 98.8% | 84.7% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 41.0 | 4.15e-01 | 100.0% | 78.8% |
| 7vwtA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 47.0 | 3.22e-01 | 97.7% | 27.3% |
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 38.0 | 3.75e-01 | 74.4% | 93.6% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 45.0 | 3.90e-01 | 91.9% | 89.8% |
| 5k29A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.54 | 45.0 | 4.34e-01 | 100.0% | 80.4% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 38.0 | 3.66e-01 | 82.6% | 65.3% |
| 3cegA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 38.0 | 2.73e-01 | 76.7% | 64.7% |
| 3apzA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 46.0 | 3.26e-01 | 100.0% | 44.1% |
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 42.0 | 3.51e-01 | 100.0% | 48.1% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.53 | 44.0 | 4.41e-01 | 98.8% | 86.7% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.53 | 42.0 | 4.16e-01 | 100.0% | 80.4% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 42.0 | 3.75e-01 | 84.9% | 95.0% |
| 3u4qB04 | 6.10.140.1030 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 29.0 | 3.19e-01 | 100.0% | 65.2% |
| 2bsqA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.52 | 37.0 | 3.20e-01 | 76.7% | 98.6% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 45.0 | 3.71e-01 | 96.5% | 75.7% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 41.0 | 4.05e-01 | 84.9% | 84.6% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.51 | 40.0 | 3.94e-01 | 95.3% | 78.9% |
| 1t9xA05 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.51 | 44.0 | 3.36e-01 | 100.0% | 44.1% |
| 2yguC00 | 1.10.238.190 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.51 | 41.0 | 3.76e-01 | 90.7% | 99.2% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.51 | 46.0 | 3.85e-01 | 100.0% | 75.5% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.30e-01 | 96.5% | 47.4% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.51 | 43.0 | 4.25e-01 | 94.2% | 92.3% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.50 | 45.0 | 4.11e-01 | 100.0% | 88.0% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 46.0 | 3.80e-01 | 100.0% | 85.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081699 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.69 | 47.0 | 4.68e-01 | 98.8% | 67.8% |
| 3497021 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.64 | 43.0 | 4.01e-01 | 97.7% | 56.2% |
| 3711198 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.64 | 44.0 | 4.43e-01 | 100.0% | 71.8% |
| 4616546 | 6155.1.1.4 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC | 0.59 | 44.0 | 4.08e-01 | 100.0% | 62.9% |
| 3446538 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.58 | 51.0 | 3.26e-01 | 100.0% | 34.1% |
| 3846608 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 54.0 | 3.54e-01 | 100.0% | 47.7% |
| 3522682 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.57 | 51.0 | 3.65e-01 | 100.0% | 91.8% |
| 5048577 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.56 | 44.0 | 4.51e-01 | 100.0% | 91.3% |
| 3849657 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.56 | 50.0 | 4.76e-01 | 100.0% | 90.0% |
| 3927398 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.56 | 37.0 | 3.44e-01 | 79.1% | 55.2% |
| 4961183 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.54 | 50.0 | 3.70e-01 | 100.0% | 69.5% |
| 4955657 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.54 | 46.0 | 3.28e-01 | 96.5% | 61.1% |
| 3269698 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.54 | 40.0 | 3.02e-01 | 100.0% | 31.4% |
| 4989797 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.54 | 42.0 | 3.16e-01 | 100.0% | 33.6% |
| 4646569 | 4994.1.1.1 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 | 0.53 | 44.0 | 4.25e-01 | 100.0% | 80.0% |
| 3171534 | 3470.1.1.46 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › VanZ | 0.53 | 45.0 | 4.37e-01 | 97.7% | 81.8% |
| 4972104 | 304.123.1.1 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 | 0.53 | 45.0 | 3.44e-01 | 93.0% | 72.3% |
| 3163612 | 107.1.1.18 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › PF29414 | 0.52 | 37.0 | 3.00e-01 | 100.0% | 37.0% |
| 3595801 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.51 | 43.0 | 4.03e-01 | 100.0% | 73.6% |
| 3346956 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.51 | 43.0 | 4.14e-01 | 100.0% | 82.1% |
| 4014527 | 532.2.1.0 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains | 0.51 | 40.0 | 3.89e-01 | 100.0% | 77.9% |
| 4033868 | 604.39.1.16 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ThiW | 0.50 | 45.0 | 3.70e-01 | 100.0% | 73.1% |
| 4216571 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.50 | 46.0 | 4.05e-01 | 100.0% | 91.2% |