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MK895508.1__QDF14600.1__BRIZO_203__00001

Bact-Vir

MK895508.1__QDF14600.1__BRIZO_203__00001

Identity

Accession:
MK895508 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Thalassavirus› Vibrio_phage_Brizo

TaxID: 2590896

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: rep: MN095770.1__QFR57587.1__CPT_Slocum_007__00007__D11-60
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26822.1 best Phage_T5_A2 52.5 8.40e-14 100.0% 37.0%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ug2A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 66.0 6.62e-01 100.0% 82.7%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 64.0 5.95e-01 100.0% 69.7%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 63.0 6.22e-01 100.0% 83.3%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 61.0 5.79e-01 100.0% 72.1%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 68.0 5.41e-01 100.0% 50.5%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 60.0 6.17e-01 100.0% 97.9%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.73 63.0 5.66e-01 98.0% 88.7%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 57.0 4.72e-01 100.0% 48.0%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 62.0 5.16e-01 100.0% 54.8%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 58.0 5.56e-01 100.0% 78.3%
3swxA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.70 48.0 4.63e-01 78.4% 62.1%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 54.0 5.52e-01 96.1% 93.6%
3c2bA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 62.0 6.16e-01 100.0% 100.0%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.73e-01 72.5% 76.4%
3qqaA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 60.0 5.78e-01 100.0% 88.1%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.53e-01 72.5% 72.4%
4cgrB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 59.0 4.03e-01 100.0% 26.7%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.03e-01 100.0% 65.3%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 55.0 4.18e-01 100.0% 39.8%
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.60e-01 98.0% 59.8%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.33e-01 100.0% 53.7%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 45.0 3.61e-01 100.0% 36.6%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.64 43.0 3.18e-01 76.5% 25.5%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 46.0 3.30e-01 100.0% 27.3%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 44.0 4.08e-01 76.5% 64.7%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.62 46.0 3.37e-01 78.4% 31.3%
3c1dA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.96e-01 96.1% 100.0%
4i17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 49.0 3.15e-01 88.2% 19.6%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 50.0 3.69e-01 98.0% 94.1%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.85e-01 94.1% 97.9%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 48.0 3.82e-01 100.0% 75.9%
3k1rA01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.58 43.0 3.80e-01 94.1% 53.1%
3l4aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.57 48.0 3.71e-01 98.0% 41.3%
4irfB00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.56 48.0 3.54e-01 98.0% 75.7%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 45.0 3.96e-01 96.1% 71.4%
4y0bA00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.56 47.0 3.52e-01 98.0% 75.0%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.53 41.0 3.46e-01 86.3% 51.7%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.52 38.0 2.89e-01 92.2% 31.7%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.52 42.0 3.24e-01 92.2% 41.3%
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.51 40.0 3.62e-01 98.0% 66.7%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 39.0 3.75e-01 92.2% 93.7%
2vl7A02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.50 43.0 3.41e-01 100.0% 58.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3856707 101.1.1.89 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.85 66.0 5.80e-01 100.0% 57.3%
3974068 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.83 61.0 5.51e-01 100.0% 58.0%
3647007 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.82 71.0 6.80e-01 100.0% 83.3%
3262509 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 67.0 5.55e-01 100.0% 54.4%
3449297 101.1.1.298 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 0.78 67.0 6.40e-01 100.0% 81.7%
3480768 101.1.1.286 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF27813 0.76 66.0 5.27e-01 100.0% 48.6%
3969367 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.76 58.0 5.57e-01 100.0% 73.3%
3943189 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.76 57.0 5.62e-01 100.0% 78.2%
3283959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 55.0 4.60e-01 98.0% 46.7%
3181120 101.1.1.20 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.71 62.0 5.00e-01 100.0% 94.0%
3948411 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.68 51.0 4.61e-01 100.0% 58.7%
5052463 3273.1.1.0 ↗ alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins 0.67 56.0 4.92e-01 98.0% 66.3%
3304429 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.66 43.0 4.05e-01 78.4% 52.3%
3719415 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.64 54.0 4.02e-01 100.0% 46.2%
3960463 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.63 43.0 4.16e-01 72.5% 61.7%
3969256 148.1.2.1 ↗ alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N 0.60 44.0 3.32e-01 84.3% 74.5%
3953159 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 51.0 3.86e-01 100.0% 45.4%
4477930 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.59 51.0 4.36e-01 100.0% 87.1%
3264733 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.58 44.0 3.55e-01 100.0% 43.2%
3505765 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.58 50.0 4.24e-01 100.0% 81.1%
3968904 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 45.0 3.67e-01 88.2% 45.3%
4018084 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 42.0 3.82e-01 98.0% 55.7%
3832644 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 49.0 3.99e-01 100.0% 72.4%
4998253 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.58 40.0 3.81e-01 76.5% 58.3%
3428082 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.57 42.0 3.91e-01 90.2% 60.0%
3458695 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 42.0 3.79e-01 100.0% 58.6%
3285620 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.55 43.0 4.08e-01 98.0% 71.4%
3258478 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.40e-01 98.0% 33.8%
3952850 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.54 42.0 3.29e-01 96.1% 36.3%
3331682 185.1.1.0 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 0.53 45.0 3.82e-01 100.0% 56.8%
5001838 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.53 43.0 3.22e-01 100.0% 38.7%