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MK903280.1__QEG09746.1__CPT_Ponderosa_029__00029
Bact-VirMK903280.1__QEG09746.1__CPT_Ponderosa_029__00029
Identity
- Accession:
- MK903280 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Ponderosavirus›
Stenotrophomonas_phage_Ponderosa
TaxID: 2591103
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-85
Domain cluster:
rep: MW286268.1__QQO90889.1__X__00022__D15-79
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rlbA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.74 | 65.0 | 4.76e-01 | 98.5% | 83.5% |
| 2eb4D00 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.69 | 61.0 | 4.07e-01 | 98.5% | 61.9% |
| 1o57A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 58.0 | 5.75e-01 | 98.5% | 97.2% |
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.67 | 59.0 | 5.85e-01 | 100.0% | 95.8% |
| 4mduA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.67 | 56.0 | 5.25e-01 | 92.5% | 76.8% |
| 1e6vA03 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.66 | 54.0 | 3.79e-01 | 92.5% | 55.7% |
| 1aoaA01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.66 | 47.0 | 3.89e-01 | 74.6% | 86.4% |
| 3h1tA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 55.0 | 3.92e-01 | 98.5% | 44.0% |
| 2g84A01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.63 | 47.0 | 3.53e-01 | 80.6% | 88.4% |
| 2ww5A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 51.0 | 3.62e-01 | 89.6% | 46.0% |
| 1mswD01 | 1.10.1320.10 | Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain | 0.62 | 48.0 | 3.12e-01 | 83.6% | 42.3% |
| 5m38C00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.61 | 52.0 | 4.40e-01 | 97.0% | 91.2% |
| 2iu4A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.61 | 53.0 | 4.13e-01 | 98.5% | 68.2% |
| 2cpmA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.60 | 51.0 | 4.69e-01 | 100.0% | 72.3% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 5.01e-01 | 95.5% | 95.5% |
| 2hs5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 5.07e-01 | 97.0% | 97.0% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 47.0 | 4.79e-01 | 92.5% | 95.4% |
| 2m71A00 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.58 | 50.0 | 4.45e-01 | 98.5% | 76.5% |
| 4rhaA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.58 | 48.0 | 3.88e-01 | 92.5% | 84.0% |
| 1qbjC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 47.0 | 4.79e-01 | 95.5% | 95.5% |
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.58 | 48.0 | 4.78e-01 | 97.0% | 97.1% |
| 1o12A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 42.0 | 2.86e-01 | 82.1% | 30.9% |
| 3iu6A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 45.0 | 3.55e-01 | 86.6% | 78.3% |
| 2fyfA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 38.0 | 3.28e-01 | 70.1% | 43.8% |
| 3oonA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.57 | 49.0 | 4.21e-01 | 100.0% | 79.6% |
| 2gtvX00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.56 | 46.0 | 4.04e-01 | 94.0% | 86.5% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 4.43e-01 | 100.0% | 83.3% |
| 2wauA02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 47.0 | 3.89e-01 | 97.0% | 91.0% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 38.0 | 4.27e-01 | 80.6% | 96.1% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.54 | 43.0 | 3.49e-01 | 88.1% | 78.0% |
| 5ejdA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 40.0 | 3.91e-01 | 88.1% | 73.3% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 42.0 | 3.28e-01 | 100.0% | 72.1% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.52 | 40.0 | 3.79e-01 | 85.1% | 69.5% |
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.86e-01 | 95.5% | 69.7% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940796 | 1075.1.2.44 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › PF27404 | 0.66 | 56.0 | 4.58e-01 | 97.0% | 93.1% |
| 3275759 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.65 | 46.0 | 4.03e-01 | 74.6% | 91.0% |
| 5026539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 55.0 | 5.00e-01 | 100.0% | 87.8% |
| 5081519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 51.0 | 4.54e-01 | 95.5% | 68.0% |
| 4973726 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 50.0 | 4.29e-01 | 92.5% | 59.1% |
| 3703137 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.61 | 52.0 | 5.21e-01 | 97.0% | 97.1% |
| 4348647 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.61 | 50.0 | 4.99e-01 | 97.0% | 95.7% |
| 4033553 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.61 | 41.0 | 3.63e-01 | 71.6% | 47.6% |
| 4360928 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.60 | 50.0 | 4.98e-01 | 98.5% | 92.9% |
| 5061998 | 101.1.2.63 ↗ | alpha arrays › HTH › HTH › winged helix domain › FaeA | 0.60 | 48.0 | 4.55e-01 | 92.5% | 75.3% |
| 3410251 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 52.0 | 3.87e-01 | 100.0% | 57.2% |
| 4985486 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.60 | 51.0 | 3.85e-01 | 97.0% | 77.5% |
| 3671762 | 101.1.2.37 ↗ | alpha arrays › HTH › HTH › winged helix domain › E2F_TDP | 0.60 | 48.0 | 4.52e-01 | 98.5% | 72.9% |
| 4994981 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 5.15e-01 | 95.5% | 98.5% |
| 5054494 | 328.4.1.1 ↗ | a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY | 0.60 | 49.0 | 4.83e-01 | 98.5% | 86.7% |
| 3275229 | 4154.1.1.0 ↗ | beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region | 0.59 | 48.0 | 3.48e-01 | 92.5% | 31.6% |
| 4992328 | 2007.22.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D | 0.59 | 47.0 | 4.05e-01 | 91.0% | 53.9% |
| 5030867 | 304.160.1.1 ↗ | a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF | 0.59 | 41.0 | 3.56e-01 | 73.1% | 49.5% |
| 5078641 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.58 | 48.0 | 4.68e-01 | 98.5% | 86.1% |
| 3216554 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.58 | 47.0 | 4.61e-01 | 92.5% | 86.7% |
| 3992117 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.58 | 45.0 | 3.30e-01 | 85.1% | 52.6% |
| 5053790 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.58 | 48.0 | 4.38e-01 | 95.5% | 69.5% |
| 4999710 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.58 | 47.0 | 3.91e-01 | 88.1% | 80.0% |
| 5044734 | 101.1.2.37 ↗ | alpha arrays › HTH › HTH › winged helix domain › E2F_TDP | 0.58 | 50.0 | 4.14e-01 | 100.0% | 53.6% |
| 4149931 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.58 | 47.0 | 4.74e-01 | 97.0% | 94.3% |
| 3396616 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.58 | 45.0 | 3.96e-01 | 85.1% | 100.0% |
| 4167111 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.58 | 50.0 | 4.20e-01 | 98.5% | 90.8% |
| 5079818 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 4.23e-01 | 91.0% | 68.9% |
| 5054801 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.57 | 49.0 | 4.51e-01 | 100.0% | 75.6% |
| 4650006 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.57 | 48.0 | 4.80e-01 | 98.5% | 94.3% |
| 3933803 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 47.0 | 3.31e-01 | 95.5% | 30.3% |
| 5010592 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.57 | 49.0 | 4.14e-01 | 100.0% | 57.5% |
| 5035255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 4.07e-01 | 94.0% | 63.2% |
| 4938695 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 48.0 | 4.75e-01 | 100.0% | 95.7% |
| 4944035 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.46e-01 | 91.0% | 96.7% |
| 3250817 | 320.4.1.0 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain | 0.56 | 45.0 | 3.81e-01 | 94.0% | 60.0% |
| 4984257 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.78e-01 | 95.5% | 100.0% |
| 4937458 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.55e-01 | 95.5% | 86.7% |
| 3408830 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.56 | 41.0 | 3.50e-01 | 77.6% | 87.2% |
| 5026732 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.56 | 45.0 | 4.18e-01 | 97.0% | 69.5% |
| 3867691 | 109.4.1.1451 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_GEMI5 | 0.56 | 47.0 | 3.18e-01 | 92.5% | 37.1% |
| 1175670 | 101.1.2.142 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 | 0.55 | 46.0 | 4.40e-01 | 100.0% | 81.2% |
| 3530824 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.55 | 46.0 | 4.40e-01 | 95.5% | 85.0% |
| 4187927 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.55 | 45.0 | 4.50e-01 | 98.5% | 94.3% |
| 4084484 | 6155.1.1.17 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › LAB_N | 0.54 | 44.0 | 4.23e-01 | 88.1% | 89.3% |
| 3606643 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.54 | 45.0 | 4.06e-01 | 100.0% | 75.7% |
| 3698423 | 601.1.2.71 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DUF3176 | 0.54 | 43.0 | 3.11e-01 | 89.6% | 70.3% |
| 4200602 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.53 | 38.0 | 3.58e-01 | 88.1% | 61.2% |
| 4012189 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.52 | 40.0 | 3.71e-01 | 88.1% | 64.7% |
| 4003332 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.51 | 43.0 | 3.60e-01 | 94.0% | 74.8% |