Back to structures

MK907271.1__QDK00557.1__JOHFDMOO_00003__00003

Bact-Vir

MK907271.1__QDK00557.1__JOHFDMOO_00003__00003

Identity

Accession:
MK907271 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-99
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.77 55.0 4.13e-01 85.9% 32.7%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 54.0 4.17e-01 85.9% 35.6%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 52.0 3.94e-01 85.9% 35.8%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 56.0 4.34e-01 91.5% 96.7%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.67 46.0 4.97e-01 76.1% 86.7%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 43.0 3.82e-01 87.3% 46.7%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.65 32.0 3.03e-01 77.5% 39.3%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 48.0 3.86e-01 90.1% 40.8%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.62 44.0 3.57e-01 90.1% 37.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 45.0 4.53e-01 88.7% 77.5%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 46.0 2.91e-01 83.1% 17.2%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 48.0 4.15e-01 90.1% 55.7%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 51.0 4.10e-01 97.2% 98.6%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 42.0 3.89e-01 78.9% 94.7%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.57 46.0 4.58e-01 91.5% 94.7%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 43.0 3.78e-01 84.5% 97.4%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.57 39.0 3.49e-01 70.4% 66.0%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 42.0 2.93e-01 80.3% 80.4%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 42.0 2.97e-01 81.7% 93.7%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 49.0 4.42e-01 100.0% 90.2%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 4.04e-01 80.3% 78.8%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 39.0 3.17e-01 73.2% 36.9%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.56 40.0 3.66e-01 74.6% 82.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.56 42.0 2.79e-01 85.9% 21.2%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 3.89e-01 77.5% 93.3%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 43.0 3.73e-01 84.5% 82.6%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 41.0 3.24e-01 83.1% 68.7%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.55 37.0 3.06e-01 73.2% 36.2%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 35.0 3.81e-01 80.3% 79.7%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.48e-01 76.1% 98.1%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.79e-01 87.3% 79.4%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 3.62e-01 81.7% 77.6%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.53 36.0 3.27e-01 73.2% 56.7%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 37.0 3.46e-01 74.6% 75.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 28.0 2.93e-01 76.1% 50.8%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.52 40.0 3.71e-01 90.1% 65.3%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.51 42.0 3.80e-01 95.8% 66.4%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.55e-01 81.7% 21.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.81e-01 81.7% 86.5%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.73e-01 83.1% 36.4%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 31.0 3.58e-01 76.1% 95.6%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.85e-01 88.7% 83.0%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 40.0 3.32e-01 87.3% 95.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 35.0 3.66e-01 81.7% 79.1%
2fe7B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 37.0 2.86e-01 78.9% 57.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926267 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 53.0 4.01e-01 85.9% 30.6%
5051613 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 52.0 4.38e-01 87.3% 46.6%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 50.0 4.23e-01 87.3% 45.2%
3220848 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 51.0 4.14e-01 87.3% 41.4%
3620870 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 47.0 4.20e-01 87.3% 52.0%
3782633 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.67 46.0 3.64e-01 70.4% 38.5%
5000609 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 46.0 3.88e-01 87.3% 41.6%
4126006 325.1.7.14 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.66 41.0 4.33e-01 80.3% 69.2%
3737835 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.66 41.0 3.67e-01 81.7% 44.0%
3510695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 43.0 4.21e-01 87.3% 62.5%
3937782 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.63 57.0 4.27e-01 100.0% 84.2%
3461718 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 45.0 3.20e-01 77.5% 31.7%
3931272 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 51.0 3.85e-01 90.1% 82.3%
3603768 2484.1.1.24 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 42.0 3.39e-01 78.9% 35.0%
4150748 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 51.0 3.93e-01 90.1% 88.7%
4941649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 38.0 3.46e-01 74.6% 46.3%
3936886 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.62 50.0 3.89e-01 88.7% 92.3%
1945733 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.62 54.0 4.16e-01 98.6% 96.3%
5049349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 42.0 3.37e-01 87.3% 33.5%
2575628 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 53.0 4.19e-01 98.6% 94.8%
3784839 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 42.0 3.75e-01 71.8% 51.0%
3939156 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 50.0 3.62e-01 90.1% 83.1%
5050853 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.60 51.0 3.56e-01 100.0% 90.5%
4229035 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.60 41.0 3.04e-01 84.5% 25.5%
3223489 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.60 46.0 3.88e-01 85.9% 96.2%
5077119 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 3.47e-01 90.1% 36.7%
4064214 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 40.0 4.20e-01 73.2% 75.4%
3715033 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.59 45.0 3.92e-01 85.9% 97.5%
1349611 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 51.0 4.02e-01 97.2% 96.7%
3924148 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 52.0 3.98e-01 100.0% 87.9%
4106394 241.2.1.6 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › PF26204 0.59 40.0 3.47e-01 85.9% 45.5%
3925232 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 51.0 3.71e-01 95.8% 84.7%
3959341 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 41.0 3.36e-01 85.9% 37.9%
5032911 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.58 40.0 2.55e-01 71.8% 19.7%
4028738 5.1.4.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.58 44.0 2.80e-01 81.7% 18.8%
3650304 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.57 32.0 3.48e-01 70.4% 65.0%
3519594 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.57 44.0 3.50e-01 85.9% 92.9%
3508197 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.79e-01 83.1% 18.2%
4171807 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.56 38.0 2.97e-01 74.6% 30.6%
3504386 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.56 30.0 3.04e-01 71.8% 51.4%
4950038 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 41.0 4.02e-01 97.2% 71.2%
3223140 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 37.0 3.17e-01 78.9% 41.7%
4561171 244.1.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.54 39.0 2.82e-01 76.1% 38.1%
5068224 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.54 42.0 2.69e-01 85.9% 94.3%
3735753 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.47e-01 93.0% 28.6%
4223616 2011.2.1.3 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.52 42.0 3.01e-01 85.9% 73.7%
4024012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.79e-01 77.5% 39.4%
3641506 3957.1.1.0 a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.52 38.0 3.58e-01 77.5% 67.1%
3438374 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 46.0 2.91e-01 100.0% 62.5%
4939572 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 41.0 2.49e-01 87.3% 65.4%
4972247 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.20e-01 83.1% 44.6%
4081797 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.51 38.0 3.04e-01 80.3% 69.0%
3839111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 3.34e-01 81.7% 57.8%
3732470 244.1.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.51 42.0 3.21e-01 95.8% 44.3%