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MK911750.1__QDP43739.1__X__00038

Bact-Vir

MK911750.1__QDP43739.1__X__00038

Identity

Accession:
MK911750 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_P738

TaxID: 1814015

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-76
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.55 48.0 3.66e-01 100.0% 82.0%
6pw7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 43.0 4.41e-01 89.0% 93.0%
2ebfX04 3.40.50.11550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 2.92e-01 100.0% 24.1%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.53 41.0 3.77e-01 89.0% 62.6%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 37.0 3.59e-01 76.7% 85.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3937960 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.56 38.0 3.66e-01 71.2% 92.9%
4436943 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.54 45.0 4.40e-01 98.6% 85.0%
3792061 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.52 36.0 3.27e-01 74.0% 63.1%
3617842 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.51 36.0 3.53e-01 75.3% 71.2%
3481293 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.51 35.0 3.46e-01 79.5% 66.3%
3251429 3525.1.1.1 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.50 35.0 3.57e-01 71.2% 77.1%
D2 high residues 80-138
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ao6A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 51.0 4.44e-01 98.3% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 37.0 3.61e-01 71.2% 82.1%
6qcbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 41.0 3.54e-01 83.1% 97.9%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 45.0 3.50e-01 100.0% 57.8%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 44.0 2.87e-01 100.0% 54.4%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.56e-01 93.2% 82.3%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 40.0 2.60e-01 91.5% 43.0%
1auiA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 41.0 2.58e-01 93.2% 31.5%
1b5fC00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 44.0 2.98e-01 100.0% 68.9%
1qs8A01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 39.0 3.00e-01 91.5% 95.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890187 6.1.1.8 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › AbfB 0.73 64.0 4.67e-01 100.0% 89.1%
3246514 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.63 46.0 3.15e-01 81.4% 100.0%
5022653 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.58 44.0 3.51e-01 86.4% 98.5%
4883408 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.57 38.0 2.92e-01 71.2% 61.3%
4978946 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 36.0 3.61e-01 100.0% 65.0%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.56 38.0 3.18e-01 71.2% 60.0%
5002450 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 37.0 3.85e-01 100.0% 74.5%
4950397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 37.0 3.82e-01 100.0% 74.5%
5080835 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 36.0 3.76e-01 100.0% 72.7%
3388146 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.55 41.0 3.67e-01 83.1% 62.5%
3494671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 33.0 3.67e-01 100.0% 80.0%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.54 39.0 3.31e-01 78.0% 62.0%
4972824 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 36.0 3.76e-01 100.0% 76.4%
4503580 1.1.7.83 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C 0.52 41.0 3.77e-01 91.5% 70.0%
4965094 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 43.0 3.35e-01 100.0% 58.6%
4947996 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 33.0 3.47e-01 100.0% 74.5%
4486974 1.1.7.84 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CzcB_C 0.50 41.0 3.66e-01 94.9% 65.6%