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MK931439.1__QEG06933.1__CPT_Sciku_060__00060

Bact-Vir

MK931439.1__QEG06933.1__CPT_Sciku_060__00060

Identity

Accession:
MK931439 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Kagunavirus› Escherichia_phage_Sciku

TaxID: 2580402

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 31-84
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.92 62.0 5.28e-01 70.4% 46.3%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.85 77.0 7.27e-01 100.0% 90.6%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 76.0 6.77e-01 100.0% 72.0%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.84 64.0 4.49e-01 81.5% 28.8%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.84 68.0 5.27e-01 96.3% 42.1%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.84 70.0 5.26e-01 96.3% 39.8%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 58.0 4.98e-01 72.2% 85.2%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.83 68.0 5.27e-01 96.3% 42.6%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.82 66.0 5.15e-01 96.3% 42.5%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.82 62.0 5.04e-01 81.5% 46.4%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 69.0 6.22e-01 100.0% 77.9%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.79 69.0 4.44e-01 96.3% 22.9%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.75 60.0 4.47e-01 87.0% 70.5%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 61.0 4.88e-01 90.7% 47.2%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.74 64.0 5.98e-01 98.1% 78.8%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 58.0 4.59e-01 90.7% 46.4%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 58.0 4.70e-01 98.1% 50.0%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.64 57.0 4.82e-01 100.0% 63.3%
6vynC01 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.62 42.0 3.86e-01 72.2% 56.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586746 603.1.1.133 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7799 0.87 78.0 5.96e-01 100.0% 48.3%
4663913 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.84 69.0 4.85e-01 90.7% 31.5%
4964878 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 74.0 6.82e-01 100.0% 84.3%
3418094 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.82 62.0 5.35e-01 79.6% 55.0%
3528863 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.82 67.0 5.21e-01 90.7% 42.6%
4030407 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.81 62.0 5.51e-01 100.0% 58.7%
3921091 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.81 72.0 5.23e-01 100.0% 37.9%
3699288 5076.2.1.9 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.76 67.0 4.16e-01 100.0% 18.3%
4964045 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.76 68.0 5.78e-01 98.1% 63.5%
4962781 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 63.0 5.77e-01 100.0% 77.3%
5055919 159.1.1.4 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH 0.74 57.0 4.79e-01 85.2% 50.0%
3583471 601.2.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 0.67 52.0 3.83e-01 96.3% 29.4%
4238998 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 54.0 5.13e-01 100.0% 78.6%