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MK932884.1__QDF14885.1__X__00048

Bact-Vir

MK932884.1__QDF14885.1__X__00048

Identity

Accession:
MK932884 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-159
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 56.0 5.78e-01 100.0% 90.9%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.53 35.0 3.79e-01 98.5% 78.4%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.86e-01 98.5% 91.9%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 4.09e-01 92.3% 97.9%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.50 39.0 4.14e-01 98.5% 94.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589732 4166.1.1.2 beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.75 70.0 6.51e-01 100.0% 82.6%
1883531 11.15.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.55 37.0 3.95e-01 99.2% 80.9%
3389304 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 34.0 3.72e-01 73.1% 84.8%
D2 high residues 164-262
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.76 67.0 5.59e-01 97.0% 98.2%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.75 68.0 6.73e-01 99.0% 97.1%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.75 68.0 6.63e-01 99.0% 96.3%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.73 66.0 6.36e-01 99.0% 97.3%
4mboA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 57.0 4.96e-01 89.9% 70.9%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 50.0 5.26e-01 97.0% 94.3%
3vm7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 49.0 4.94e-01 99.0% 82.7%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 56.0 4.50e-01 100.0% 69.7%
2n1kA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.55e-01 100.0% 75.5%
2z1kA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 46.0 4.93e-01 97.0% 94.1%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 39.0 4.48e-01 94.9% 100.0%
3bpsA02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.59 43.0 3.79e-01 99.0% 51.3%
3amkA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 51.0 5.15e-01 98.0% 100.0%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 46.0 4.79e-01 97.0% 96.6%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.58 44.0 4.41e-01 92.9% 79.6%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.56e-01 94.9% 95.9%
1whoA00 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.57 40.0 4.12e-01 94.9% 76.6%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.57 48.0 4.06e-01 97.0% 77.0%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 4.04e-01 88.9% 83.1%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 4.09e-01 79.8% 78.6%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 4.26e-01 98.0% 72.5%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 4.32e-01 97.0% 74.8%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 43.0 3.52e-01 87.9% 71.9%
2vmhA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.55 48.0 4.27e-01 100.0% 100.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 47.0 3.53e-01 100.0% 81.1%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 43.0 4.24e-01 89.9% 82.3%
4lb8A02 2.60.40.3900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.28e-01 98.0% 86.9%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 4.10e-01 79.8% 80.6%
3ikwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.28e-01 93.9% 95.7%
4uxuA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 42.0 3.40e-01 86.9% 89.5%
2prxA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 36.0 3.52e-01 70.7% 96.5%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.94e-01 81.8% 89.2%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.53 44.0 3.47e-01 98.0% 83.2%
8os3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.95e-01 91.9% 82.6%
2yyoA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 44.0 3.85e-01 96.0% 89.4%
8bvoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.81e-01 88.9% 82.6%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.52 38.0 3.68e-01 76.8% 74.8%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.52 38.0 3.44e-01 79.8% 91.8%
3ks7A01 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.52 44.0 3.57e-01 99.0% 78.8%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 39.0 3.98e-01 82.8% 89.5%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.48e-01 98.0% 84.5%
3pl0B00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 42.0 3.23e-01 91.9% 75.4%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 43.0 3.73e-01 96.0% 95.2%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.96e-01 89.9% 77.6%
8bxrA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.68e-01 88.9% 81.6%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 32.0 3.67e-01 82.8% 100.0%
4r4xA02 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.51 43.0 3.62e-01 100.0% 82.0%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 42.0 3.14e-01 97.0% 67.9%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 34.0 3.59e-01 70.7% 100.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
961561 5092.1.1.4 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.76 68.0 6.75e-01 98.0% 97.1%
3588403 5092.1.1.0 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins 0.75 68.0 6.73e-01 99.0% 99.0%
1156585 5092.1.1.4 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.75 68.0 6.49e-01 99.0% 91.2%
184600 5092.1.1.4 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.73 66.0 6.36e-01 99.0% 97.3%
1487334 5092.1.1.7 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Fibre_HD 0.68 61.0 5.80e-01 99.0% 92.2%
4513733 11.1.5.48 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 0.67 55.0 4.76e-01 89.9% 71.6%
2491354 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.66 57.0 5.84e-01 99.0% 99.0%
1241369 12.1.1.53 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C_2 0.66 52.0 5.62e-01 94.9% 100.0%
3258963 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.75e-01 93.9% 91.3%
1933304 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 4.70e-01 94.9% 85.2%
4027527 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.62 46.0 4.92e-01 81.8% 92.9%
5038999 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.62 50.0 4.01e-01 89.9% 44.0%
5036977 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.61 48.0 3.98e-01 89.9% 46.7%
4983955 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 49.0 5.04e-01 98.0% 91.6%
4959958 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.61 46.0 4.51e-01 89.9% 74.5%
184770 3370.1.1.1 beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 › Lactococcin_972 0.60 39.0 4.48e-01 94.9% 100.0%
2945941 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.60 53.0 5.29e-01 98.0% 100.0%
4446486 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.59 51.0 4.73e-01 98.0% 99.2%
3774152 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.59 43.0 4.11e-01 93.9% 66.1%
3783233 4081.1.1.7 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.59 48.0 3.90e-01 89.9% 48.7%
5056882 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.59 49.0 3.99e-01 94.9% 79.0%
3501844 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.59 52.0 5.12e-01 98.0% 97.1%
5083968 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 47.0 4.45e-01 89.9% 81.6%
4948100 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 50.0 3.76e-01 100.0% 95.0%
4944486 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.58 47.0 3.85e-01 88.9% 47.9%
3452049 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.58 51.0 5.04e-01 99.0% 95.2%
5042033 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.58 47.0 4.03e-01 89.9% 55.0%
429704 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.58 50.0 4.97e-01 98.0% 94.3%
3204359 11.1.5.59 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.58 48.0 4.29e-01 93.9% 93.8%
4647293 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 45.0 4.51e-01 91.9% 85.0%
5069972 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.34e-01 93.9% 87.1%
4601034 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.57 50.0 5.10e-01 97.0% 98.0%
4342482 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 44.0 4.55e-01 91.9% 89.5%
4982344 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.37e-01 91.9% 89.4%
4389184 11.1.1.1065 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25971 0.57 46.0 4.54e-01 93.9% 84.8%
4959331 1.1.7.27 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 0.56 38.0 4.16e-01 70.7% 100.0%
4978194 7072.1.1.0 beta sandwiches › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain 0.56 48.0 4.25e-01 97.0% 74.0%
4991092 3370.1.1.0 beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 0.56 40.0 4.32e-01 89.9% 93.8%
5073452 7072.1.1.0 beta sandwiches › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain › N-terminal half of TgpA periplasmic domain 0.56 48.0 4.20e-01 97.0% 76.1%
5056154 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.56 47.0 4.13e-01 94.9% 92.3%
5070422 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 4.14e-01 79.8% 86.0%
3809849 10.32.1.199 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF642 0.55 46.0 3.97e-01 96.0% 100.0%
5047975 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 4.19e-01 94.9% 88.9%
3891509 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 39.0 4.05e-01 78.8% 83.2%
4026939 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 43.0 4.17e-01 89.9% 88.7%
3822510 10.32.1.259 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WAK 0.53 46.0 3.97e-01 100.0% 97.1%
5053195 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.53 45.0 4.19e-01 98.0% 74.4%
4927821 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 39.0 3.97e-01 77.8% 86.3%
3690842 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.53 40.0 4.28e-01 84.8% 100.0%
3922225 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.53 44.0 4.01e-01 92.9% 80.0%
3821278 10.32.1.38 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.53 45.0 3.97e-01 100.0% 98.8%
3362052 10.32.1.38 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.51 41.0 3.72e-01 92.9% 82.8%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.50 32.0 3.50e-01 86.9% 80.8%