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MK932884.1__QDF14887.1__X__00050
Bact-VirMK932884.1__QDF14887.1__X__00050
Identity
- Accession:
- MK932884 ↗
- Kingdom:
- phage
Quality
93.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-59
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f0cA02 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.70 | 61.0 | 5.08e-01 | 100.0% | 56.7% |
| 2bseA00 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.68 | 58.0 | 4.87e-01 | 100.0% | 54.2% |
| 3a8pB01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 47.0 | 3.73e-01 | 77.6% | 69.0% |
| 2p0hA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 47.0 | 3.65e-01 | 77.6% | 73.7% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.64 | 38.0 | 2.22e-01 | 94.8% | 6.4% |
| 6dw1A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.59 | 51.0 | 3.53e-01 | 100.0% | 51.4% |
| 3v76A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 39.0 | 3.44e-01 | 70.7% | 51.1% |
| 1f98A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 43.0 | 3.39e-01 | 79.3% | 76.0% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 41.0 | 3.17e-01 | 79.3% | 73.2% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 40.0 | 3.84e-01 | 96.6% | 65.7% |
| 1s7mA03 | 2.20.25.140 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 27.0 | 3.34e-01 | 100.0% | 89.3% |
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.55 | 38.0 | 3.04e-01 | 74.1% | 66.4% |
| 3k6fA00 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.55 | 44.0 | 3.91e-01 | 100.0% | 59.0% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 43.0 | 3.29e-01 | 91.4% | 82.9% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.53 | 40.0 | 3.06e-01 | 91.4% | 86.1% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.52e-01 | 91.4% | 53.7% |
| 4p25D01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.52 | 42.0 | 3.11e-01 | 100.0% | 89.2% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 40.0 | 3.01e-01 | 87.9% | 65.2% |
| 1eotA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 38.0 | 3.56e-01 | 93.1% | 62.2% |
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.55e-01 | 89.7% | 61.4% |
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.51 | 43.0 | 3.58e-01 | 98.3% | 54.1% |
| 4yokA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.51 | 37.0 | 3.28e-01 | 81.0% | 55.3% |
| 1qwoA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.51 | 40.0 | 2.56e-01 | 100.0% | 84.4% |
| 6d92A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 41.0 | 2.82e-01 | 98.3% | 57.8% |
| 5f1mA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.50 | 40.0 | 2.81e-01 | 100.0% | 52.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.72 | 52.0 | 3.48e-01 | 77.6% | 27.6% | |
| 3781119 | 5.1.4.97 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop | 0.71 | 53.0 | 3.13e-01 | 79.3% | 83.2% |
| 961561 | 5092.1.1.4 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP | 0.70 | 60.0 | 5.07e-01 | 100.0% | 57.3% |
| 1156585 | 5092.1.1.4 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP | 0.68 | 58.0 | 4.79e-01 | 100.0% | 51.3% |
| 3478107 | 3966.1.1.1 ↗ | a+b complex topology › Mitoribosomal protein mS22 › Mitoribosomal protein mS22 › Mitoribosomal protein mS22 › MRP-S22 | 0.67 | 49.0 | 3.11e-01 | 79.3% | 16.5% |
| 3413735 | 3435.1.1.6 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF155 | 0.66 | 49.0 | 3.63e-01 | 81.0% | 46.5% |
| 3210606 | 220.1.1.58 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like | 0.63 | 48.0 | 3.65e-01 | 79.3% | 69.6% |
| 3259095 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 42.0 | 3.25e-01 | 77.6% | 52.5% |
| 3649242 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.56 | 43.0 | 2.78e-01 | 86.2% | 81.0% |
| 4017303 | 11.1.1.884 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Metallopep | 0.55 | 45.0 | 3.87e-01 | 100.0% | 58.1% |
| 1820948 | 11.1.4.89 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Ig_DR_A0283-like | 0.55 | 39.0 | 3.30e-01 | 86.2% | 41.4% |
| 3483489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 3.58e-01 | 75.9% | 68.0% |
| 3483806 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.54 | 38.0 | 2.96e-01 | 75.9% | 64.0% |
| 3936276 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.54 | 42.0 | 2.96e-01 | 91.4% | 52.0% |
| 5029613 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.82e-01 | 100.0% | 60.0% |
| 5053293 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 3.52e-01 | 100.0% | 51.5% |
| 4113463 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.53 | 40.0 | 3.30e-01 | 87.9% | 51.7% |
| 5062206 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.46e-01 | 93.1% | 51.0% |
| 3704834 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.52 | 39.0 | 3.50e-01 | 89.7% | 68.4% |
| 5055379 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 36.0 | 3.40e-01 | 81.0% | 56.2% |
| 3828683 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.51 | 41.0 | 3.33e-01 | 98.3% | 43.0% |
| 1514716 | 11.1.4.19 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF3823 | 0.51 | 37.0 | 3.27e-01 | 81.0% | 54.7% |
| 5030039 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 36.0 | 3.26e-01 | 86.2% | 51.7% |
| 3718566 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.51 | 39.0 | 2.53e-01 | 91.4% | 68.6% |
| 3992002 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.58e-01 | 100.0% | 61.0% |
| 3945605 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.51 | 36.0 | 3.26e-01 | 82.8% | 51.1% |
| 3707477 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 44.0 | 2.66e-01 | 100.0% | 96.7% |
| 4294730 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.50 | 38.0 | 3.00e-01 | 87.9% | 44.3% |
| 3315718 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.50 | 39.0 | 3.45e-01 | 94.8% | 61.2% |
| 4153200 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.50 | 39.0 | 3.06e-01 | 93.1% | 84.0% |