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MK932884.1__QDF14891.1__X__00054
Bact-VirMK932884.1__QDF14891.1__X__00054
Identity
- Accession:
- MK932884 ↗
- Kingdom:
- phage
Quality
74.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-88
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 47.0 | 4.19e-01 | 100.0% | 55.1% |
| 2m2jA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.63 | 47.0 | 4.57e-01 | 100.0% | 70.4% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.62 | 49.0 | 4.49e-01 | 100.0% | 64.0% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.62 | 46.0 | 3.95e-01 | 100.0% | 49.5% |
| 5c0oH00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 45.0 | 3.15e-01 | 79.0% | 51.7% |
| 1ygyA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 44.0 | 4.12e-01 | 100.0% | 61.8% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 46.0 | 4.26e-01 | 100.0% | 62.5% |
| 2r5vB02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 42.0 | 3.01e-01 | 100.0% | 23.6% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 48.0 | 4.13e-01 | 100.0% | 55.6% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.59 | 52.0 | 4.29e-01 | 100.0% | 67.0% |
| 5xilA03 | 3.30.110.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS | 0.59 | 51.0 | 4.61e-01 | 100.0% | 78.2% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 40.0 | 3.78e-01 | 100.0% | 59.5% |
| 1jc4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 37.0 | 2.91e-01 | 100.0% | 29.0% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 40.0 | 3.69e-01 | 100.0% | 56.5% |
| 7c51A01 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.56 | 48.0 | 4.07e-01 | 100.0% | 64.9% |
| 7jrjK01 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.56 | 50.0 | 3.71e-01 | 100.0% | 45.5% |
| 2i6gB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.43e-01 | 100.0% | 32.2% |
| 4z9eA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.55 | 45.0 | 4.16e-01 | 100.0% | 69.4% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 38.0 | 3.44e-01 | 100.0% | 52.3% |
| 3ggdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 46.0 | 3.14e-01 | 100.0% | 35.0% |
| 5v7qT00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 44.0 | 3.92e-01 | 100.0% | 60.2% |
| 1sc6A03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 38.0 | 3.57e-01 | 100.0% | 58.5% |
| 1nvmB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 45.0 | 3.46e-01 | 100.0% | 45.5% |
| 3moiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 41.0 | 3.02e-01 | 91.9% | 86.9% |
| 3j7yU00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 43.0 | 3.68e-01 | 100.0% | 54.1% |
| 3u6yA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.53 | 46.0 | 3.97e-01 | 100.0% | 64.6% |
| 7neaA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.52 | 44.0 | 3.63e-01 | 98.4% | 100.0% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.52 | 44.0 | 3.43e-01 | 100.0% | 86.0% |
| 2r2dA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 38.0 | 2.59e-01 | 83.9% | 67.8% |
| 1b3tA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.52 | 44.0 | 3.41e-01 | 100.0% | 41.5% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 38.0 | 2.94e-01 | 88.7% | 32.1% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 44.0 | 3.04e-01 | 100.0% | 27.0% |
| 2qdfA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 46.0 | 4.26e-01 | 100.0% | 84.4% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.51 | 42.0 | 3.53e-01 | 100.0% | 65.0% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.50 | 43.0 | 3.72e-01 | 100.0% | 69.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080913 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.66 | 53.0 | 3.13e-01 | 100.0% | 11.1% |
| 3641833 | 304.8.1.57 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 | 0.62 | 45.0 | 3.72e-01 | 100.0% | 41.7% |
| 4127809 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.61 | 48.0 | 4.29e-01 | 100.0% | 61.8% |
| 4091380 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.59 | 52.0 | 4.32e-01 | 100.0% | 68.2% |
| 3557382 | 358.2.1.1 ↗ | a+b complex topology › SRCR-like › A heparin-binding domain › A heparin-binding domain › APP_N | 0.58 | 48.0 | 4.28e-01 | 100.0% | 89.0% |
| 4952063 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.58 | 51.0 | 3.99e-01 | 100.0% | 52.6% |
| 3179514 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 48.0 | 4.33e-01 | 100.0% | 66.7% |
| 3957913 | 814.1.1.3 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › UTRA | 0.57 | 46.0 | 3.46e-01 | 90.3% | 84.4% |
| 4931291 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.57 | 45.0 | 3.28e-01 | 100.0% | 28.5% |
| 3723432 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.57 | 48.0 | 3.25e-01 | 100.0% | 32.8% |
| 4136515 | 310.3.1.23 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 | 0.57 | 49.0 | 3.71e-01 | 100.0% | 39.4% |
| 3662024 | 304.30.1.1 ↗ | a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A | 0.56 | 49.0 | 4.32e-01 | 100.0% | 66.7% |
| 3665347 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.56 | 49.0 | 4.12e-01 | 100.0% | 58.1% |
| 5052015 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.56 | 48.0 | 4.11e-01 | 100.0% | 66.7% |
| 5004549 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.55 | 48.0 | 4.05e-01 | 100.0% | 63.0% |
| 3685597 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.55 | 45.0 | 3.16e-01 | 100.0% | 26.3% |
| 3821846 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 49.0 | 4.03e-01 | 100.0% | 58.2% |
| 3941844 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.54 | 46.0 | 3.20e-01 | 100.0% | 27.9% |
| 3178286 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 48.0 | 2.91e-01 | 100.0% | 18.1% |
| 5015799 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.54 | 45.0 | 3.85e-01 | 100.0% | 61.5% |
| 4927706 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.54 | 45.0 | 4.00e-01 | 100.0% | 66.7% |
| 4830306 | 2003.1.5.44 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MT-A70 | 0.54 | 46.0 | 3.29e-01 | 100.0% | 32.6% |
| 4235559 | 304.8.1.61 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT1 | 0.54 | 46.0 | 3.36e-01 | 100.0% | 36.8% |
| 5022859 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.53 | 45.0 | 3.90e-01 | 100.0% | 62.9% |
| 4370053 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.53 | 39.0 | 2.82e-01 | 100.0% | 25.6% |
| 3728440 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 46.0 | 4.06e-01 | 100.0% | 67.4% |
| 3617179 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 45.0 | 3.51e-01 | 100.0% | 42.8% |
| 2106280 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.52 | 44.0 | 3.39e-01 | 100.0% | 88.4% |
| 3958223 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 43.0 | 3.85e-01 | 96.8% | 68.4% |
| 1117573 | 2003.1.5.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 | 0.51 | 45.0 | 3.19e-01 | 100.0% | 32.0% |
| 3721871 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.51 | 40.0 | 2.80e-01 | 100.0% | 24.4% |
| None | — | 0.51 | 44.0 | 3.16e-01 | 100.0% | 31.5% | |
| 1030952 | 2003.1.5.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 | 0.51 | 44.0 | 3.23e-01 | 100.0% | 34.6% |
| 5045995 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.51 | 44.0 | 2.81e-01 | 100.0% | 21.2% |
| 4951176 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.51 | 43.0 | 3.51e-01 | 100.0% | 53.1% |
| 3870891 | 929.1.1.1 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin | 0.51 | 30.0 | 2.82e-01 | 100.0% | 42.4% |
| 5076403 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.51 | 42.0 | 3.44e-01 | 100.0% | 91.7% |
| 3479658 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 45.0 | 3.97e-01 | 100.0% | 70.0% |
| 4422872 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.51 | 39.0 | 2.76e-01 | 87.1% | 26.7% |
| 3502552 | 306.10.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › H1_KCTD8_12_16 | 0.50 | 45.0 | 3.58e-01 | 100.0% | 96.8% |