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MK937592.1__QDH91859.1__SEA_PHRAPPUCCINO_184__00184

Bact-Vir

MK937592.1__QDH91859.1__SEA_PHRAPPUCCINO_184__00184

Identity

Accession:
MK937592 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phrappuccinovirus› Mycobacterium_phage_Phrappuccino

TaxID: 2591223

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-49
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.87 62.0 4.60e-01 75.6% 35.5%
1ox3A00 1.20.5.320 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 6-Phosphogluconate Dehydrogenase, domain 3 0.84 60.0 4.46e-01 75.6% 31.5%
4je5C00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.75 67.0 3.79e-01 100.0% 27.2%
3zbqA00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.72 55.0 3.29e-01 82.2% 34.6%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 61.0 4.73e-01 93.3% 61.7%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.69 54.0 3.75e-01 86.7% 52.7%
6zxbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.67 49.0 3.47e-01 80.0% 54.9%
4upkA02 6.10.250.3360 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 52.0 5.24e-01 91.1% 89.1%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.61 44.0 2.63e-01 75.6% 59.2%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.60 42.0 2.57e-01 75.6% 34.0%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.58 46.0 2.79e-01 86.7% 53.8%
3d7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 35.0 3.00e-01 75.6% 51.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4035697 5054.1.1.7 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.57 46.0 3.52e-01 95.6% 69.2%
4991731 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.54 44.0 2.68e-01 93.3% 75.1%
D2 high residues 56-103
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23886.2 best DUF7239 36.9 5.30e-09 100.0% 41.1%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.62 52.0 3.44e-01 93.8% 57.5%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 44.0 3.39e-01 93.8% 93.6%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.37e-01 95.8% 57.6%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 43.0 3.57e-01 89.6% 63.8%
1tsjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 45.0 3.50e-01 93.8% 70.9%
2vseA05 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.36e-01 100.0% 85.9%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 44.0 3.20e-01 97.9% 47.3%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 46.0 2.76e-01 100.0% 51.4%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.24e-01 100.0% 85.3%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.25e-01 75.0% 68.5%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 43.0 3.75e-01 100.0% 59.2%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 43.0 3.39e-01 100.0% 57.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2983271 6.1.1.19 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.57 44.0 3.46e-01 97.9% 95.6%
5072701 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.57 49.0 2.87e-01 97.9% 26.0%
4992391 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.55 40.0 2.57e-01 79.2% 28.9%
5048065 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 44.0 3.57e-01 93.8% 49.0%
3904420 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.53 42.0 3.16e-01 100.0% 85.3%
3606537 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.52 39.0 2.55e-01 87.5% 20.8%
4860549 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.51 37.0 3.87e-01 93.8% 86.7%
3926425 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.50 31.0 2.53e-01 97.9% 27.0%