Back to structures

MK937597.1__QDH92307.1__SEA_SPOOKY_39__00039

Bact-Vir

MK937597.1__QDH92307.1__SEA_SPOOKY_39__00039

Identity

Accession:
MK937597 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.80 61.0 5.96e-01 100.0% 75.0%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 58.0 5.82e-01 100.0% 80.6%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 47.0 4.75e-01 78.8% 65.2%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 43.0 4.76e-01 83.3% 75.0%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 44.0 4.30e-01 77.3% 56.2%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 4.74e-01 77.3% 74.1%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 43.0 4.45e-01 77.3% 66.1%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 39.0 2.72e-01 75.8% 18.4%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 43.0 3.62e-01 77.3% 37.6%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 55.0 5.44e-01 100.0% 85.7%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.00e-01 78.8% 45.2%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.67 57.0 5.44e-01 100.0% 82.1%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 50.0 4.97e-01 100.0% 79.4%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 3.81e-01 78.8% 40.8%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 3.99e-01 78.8% 54.1%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.23e-01 83.3% 58.4%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.12e-01 89.4% 59.8%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.90e-01 77.3% 55.2%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.09e-01 87.9% 59.8%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.77e-01 77.3% 54.0%
5undA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 28.0 3.02e-01 98.5% 48.1%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.52e-01 87.9% 76.1%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.25e-01 93.9% 60.6%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.15e-01 78.8% 71.4%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.53e-01 93.9% 40.0%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.86e-01 77.3% 64.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.70e-01 83.3% 52.0%
6teyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.34e-01 93.9% 76.7%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.12e-01 93.9% 64.4%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.90e-01 87.9% 70.0%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.10e-01 98.5% 67.0%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 3.62e-01 93.9% 63.0%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.76e-01 75.8% 73.6%
5adxJ01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 37.0 3.29e-01 74.2% 100.0%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.33e-01 92.4% 78.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.43e-01 93.9% 45.3%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 42.0 3.32e-01 97.0% 56.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.38e-01 93.9% 44.0%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.51 39.0 3.10e-01 83.3% 77.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.83e-01 98.5% 71.8%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.84e-01 100.0% 81.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075144 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.75 67.0 6.47e-01 100.0% 86.7%
5073619 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.74 65.0 6.56e-01 97.0% 96.9%
4547857 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 64.0 5.98e-01 100.0% 78.8%
5028061 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 33.0 2.94e-01 100.0% 31.1%
4998593 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 63.0 5.27e-01 100.0% 57.4%
4064277 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.66 51.0 5.15e-01 100.0% 84.6%
5005994 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 47.0 4.23e-01 78.8% 55.6%
4968246 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.64 49.0 3.90e-01 83.3% 42.4%
3306699 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.64 47.0 2.92e-01 83.3% 13.4%
5016748 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.64 48.0 3.92e-01 87.9% 44.2%
4965874 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 48.0 3.77e-01 83.3% 39.6%
5033290 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 47.0 3.89e-01 87.9% 44.2%
5010738 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 46.0 3.80e-01 78.8% 43.2%
3278855 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 44.0 4.52e-01 83.3% 75.4%
4937951 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.63 45.0 3.94e-01 78.8% 50.0%
3985984 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.23e-01 78.8% 62.5%
4976847 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 46.0 3.90e-01 83.3% 47.3%
5011653 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 45.0 3.78e-01 78.8% 45.5%
5080684 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.62 45.0 3.43e-01 78.8% 32.9%
4120250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.32e-01 78.8% 65.0%
5012029 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 46.0 3.79e-01 83.3% 44.2%
4556736 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 45.0 4.49e-01 78.8% 74.3%
5073503 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.66e-01 77.3% 43.5%
4955571 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 41.0 3.48e-01 71.2% 59.1%
3278012 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.15e-01 78.8% 71.4%
4016413 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 41.0 3.78e-01 100.0% 57.6%
4132734 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.58 40.0 3.38e-01 74.2% 96.7%
5012975 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.58 48.0 4.14e-01 92.4% 61.0%
4969068 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 47.0 4.31e-01 92.4% 71.1%
4188072 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.57 42.0 3.92e-01 77.3% 63.7%
4476647 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.57 45.0 3.53e-01 87.9% 40.7%
4188620 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.57 41.0 3.81e-01 77.3% 61.2%
4986012 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 47.0 3.23e-01 89.4% 28.1%
5013495 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.84e-01 92.4% 52.5%
4955409 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.55 45.0 3.17e-01 92.4% 30.0%
4976773 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.55 47.0 4.05e-01 100.0% 65.5%
3489391 5051.1.1.0 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.54 43.0 2.64e-01 92.4% 81.6%
3602412 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.68e-01 87.9% 54.3%
4978826 873.1.1.18 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HTH_24 0.54 46.0 3.19e-01 93.9% 28.3%
5052844 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 47.0 3.37e-01 100.0% 43.9%
4404596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 3.81e-01 100.0% 55.4%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 4.09e-01 98.5% 76.2%
4603329 101.1.2.108 alpha arrays › HTH › HTH › winged helix domain › PuR_N 0.53 38.0 3.60e-01 75.8% 66.3%
3953587 2008.1.1.168 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 0.53 42.0 3.69e-01 87.9% 66.0%
5062639 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 45.0 4.04e-01 95.5% 73.7%
4999601 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.79e-01 92.4% 79.0%
3487435 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 43.0 3.87e-01 100.0% 62.9%
4107533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 45.0 3.61e-01 95.5% 63.1%
3662216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 2.85e-01 92.4% 26.7%
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.53 47.0 3.04e-01 100.0% 24.2%
4043692 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.53 39.0 3.27e-01 81.8% 93.3%
5070036 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 46.0 3.51e-01 98.5% 72.0%
4167796 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 42.0 3.12e-01 100.0% 34.4%
5058727 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 3.42e-01 97.0% 71.7%
4655417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.69e-01 100.0% 60.0%
4108761 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 42.0 3.36e-01 98.5% 49.3%
3670291 101.1.2.493 alpha arrays › HTH › HTH › winged helix domain › PF26557 0.50 42.0 4.21e-01 95.5% 91.4%
3645708 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.50 44.0 3.73e-01 100.0% 65.2%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.50 42.0 3.66e-01 98.5% 64.5%
4980261 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 3.67e-01 93.9% 60.0%
4070220 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.50 38.0 3.25e-01 87.9% 90.4%