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MK937603.1__QDH92801.1__SEA_BAKERY_16__00016

Bact-Vir

MK937603.1__QDH92801.1__SEA_BAKERY_16__00016

Identity

Accession:
MK937603 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-80
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 49.0 4.85e-01 83.1% 72.8%
3c5iD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 49.0 4.95e-01 80.5% 96.1%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 50.0 4.30e-01 83.1% 90.0%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.64 44.0 4.12e-01 79.2% 56.7%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.63 46.0 4.59e-01 79.2% 96.3%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 53.0 3.71e-01 96.1% 41.2%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.47e-01 98.7% 40.7%
1y4wA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 49.0 3.19e-01 89.6% 81.7%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 54.0 3.34e-01 100.0% 65.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.61 37.0 3.84e-01 80.5% 65.3%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.39e-01 74.0% 77.8%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 52.0 3.54e-01 100.0% 75.2%
7k7jA02 2.60.40.1770 Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain 0.60 40.0 4.39e-01 71.4% 87.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.28e-01 76.6% 83.1%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.95e-01 81.8% 94.1%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.42e-01 100.0% 83.4%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 51.0 3.45e-01 100.0% 75.6%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.59 41.0 4.39e-01 75.3% 89.2%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 50.0 3.49e-01 100.0% 79.9%
2pm9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.33e-01 97.4% 41.0%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 47.0 3.01e-01 93.5% 44.1%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 50.0 3.43e-01 98.7% 36.5%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.30e-01 98.7% 87.1%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.56 40.0 3.36e-01 76.6% 51.1%
4ccdA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 41.0 2.91e-01 80.5% 65.9%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 48.0 3.09e-01 100.0% 52.6%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 47.0 3.23e-01 98.7% 84.1%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 43.0 3.07e-01 85.7% 72.2%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.55 43.0 3.10e-01 85.7% 68.6%
3dydA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 41.0 3.43e-01 79.2% 62.8%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 44.0 3.37e-01 89.6% 88.2%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 40.0 3.30e-01 77.9% 52.3%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.55 39.0 3.61e-01 74.0% 86.6%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.49e-01 79.2% 71.0%
1bh5A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 39.0 3.08e-01 76.6% 49.7%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.96e-01 98.7% 37.6%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.54 38.0 3.46e-01 74.0% 68.9%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 37.0 2.31e-01 71.4% 78.7%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 39.0 3.39e-01 77.9% 52.9%
2iusD01 3.30.980.40 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.53 43.0 4.05e-01 90.9% 78.6%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 42.0 3.63e-01 93.5% 85.7%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 3.27e-01 76.6% 49.6%
3cinA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 36.0 3.36e-01 72.7% 97.1%
1kllA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 33.0 2.86e-01 70.1% 37.5%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 43.0 3.18e-01 92.2% 53.9%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 3.24e-01 76.6% 50.4%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 38.0 3.37e-01 79.2% 96.7%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.82e-01 97.4% 58.6%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.39e-01 90.9% 90.0%
1uswA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.01e-01 96.1% 35.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.50 43.0 3.41e-01 98.7% 59.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4116610 243.3.1.52 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.73 64.0 5.55e-01 96.1% 96.5%
3587082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 46.0 5.24e-01 71.4% 90.7%
4031476 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 55.0 5.01e-01 84.4% 67.0%
3196761 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.67 48.0 4.32e-01 76.6% 57.8%
4124150 5.1.3.154 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.66 51.0 3.25e-01 85.7% 23.9%
4201712 243.3.1.37 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4901 0.66 48.0 5.14e-01 81.8% 93.8%
5056888 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 50.0 5.13e-01 83.1% 91.9%
3708078 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.64 53.0 3.29e-01 92.2% 27.8%
4104131 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.64 52.0 3.26e-01 88.3% 46.3%
4940119 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 53.0 4.27e-01 92.2% 55.5%
3242101 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.64 52.0 3.11e-01 90.9% 43.7%
4017093 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 48.0 3.82e-01 80.5% 60.1%
4934625 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 50.0 4.70e-01 88.3% 90.5%
3516215 206.1.1.44 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.63 48.0 3.39e-01 83.1% 78.0%
3402009 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.63 55.0 3.54e-01 97.4% 88.5%
4393843 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.62 54.0 3.48e-01 97.4% 86.1%
3738281 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 49.0 3.22e-01 84.4% 34.3%
3958008 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.62 48.0 4.07e-01 84.4% 76.2%
3865506 4210.1.1.3 a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.62 49.0 4.43e-01 88.3% 76.4%
3402051 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.61 46.0 4.63e-01 79.2% 82.1%
4259726 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.61 52.0 3.40e-01 97.4% 88.2%
4011588 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.60 45.0 4.59e-01 77.9% 90.7%
3485051 389.1.1.93 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_CRD 0.60 41.0 4.66e-01 76.6% 100.0%
3437699 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 53.0 3.76e-01 98.7% 75.8%
3598657 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 3.91e-01 76.6% 57.0%
3191760 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 52.0 3.63e-01 98.7% 62.6%
3755672 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 44.0 3.29e-01 79.2% 58.5%
1688207 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.59 51.0 3.49e-01 100.0% 78.8%
3424661 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 52.0 3.41e-01 100.0% 51.3%
4026678 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 38.0 4.02e-01 75.3% 72.9%
3192080 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 52.0 3.37e-01 100.0% 52.5%
3987244 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.59 50.0 3.40e-01 94.8% 62.8%
4023778 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.59 50.0 3.26e-01 97.4% 90.0%
4026900 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.59 43.0 3.75e-01 83.1% 51.3%
3421489 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 52.0 3.51e-01 100.0% 62.1%
3995431 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 42.0 4.28e-01 76.6% 93.3%
4024727 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 3.87e-01 79.2% 57.7%
3601275 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 51.0 3.20e-01 100.0% 84.2%
3590243 6044.1.1.1 a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 0.57 43.0 3.94e-01 81.8% 97.1%
4783165 5.1.3.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.57 50.0 3.90e-01 98.7% 80.6%
119464 211.1.1.4 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › HGLS 0.57 41.0 3.42e-01 75.3% 61.5%
5039970 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.57 50.0 3.15e-01 100.0% 66.3%
3591253 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 50.0 3.23e-01 100.0% 59.2%
3833804 5.1.2.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › GINT1_N 0.56 48.0 3.22e-01 100.0% 81.8%
3578391 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.69e-01 74.0% 68.4%
4944962 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 40.0 3.73e-01 77.9% 62.0%
4875999 309.1.1.2 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.54 42.0 2.89e-01 85.7% 83.4%
1214662 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 33.0 3.39e-01 70.1% 64.4%
3575745 5.1.4.90 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.51 42.0 2.84e-01 97.4% 87.6%
4033266 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 42.0 2.95e-01 93.5% 55.1%
3484705 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.50 41.0 3.35e-01 88.3% 85.7%
3494369 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 40.0 3.41e-01 90.9% 82.2%