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MK937609.1__QDH93375.1__SEA_SEKHMET_37__00037
Bact-VirMK937609.1__QDH93375.1__SEA_SEKHMET_37__00037
Identity
- Accession:
- MK937609 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Taxonomy
TaxID: 2591209
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-99
Domain cluster:
rep: KY250482.1__APQ42606.1__phi16_gp028__00028__D18-92
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02899.24 best | Phage_int_SAM_1 | 41.1 | 2.50e-10 | 96.5% | 92.8% |
| PF13495.13 | Phage_int_SAM_4 | 29.0 | 1.50e-06 | 96.5% | 83.5% |
D2
high
residues 127-196
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.82 | 56.0 | 6.21e-01 | 70.0% | 87.5% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 51.0 | 4.91e-01 | 70.0% | 61.3% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 50.0 | 5.36e-01 | 72.9% | 81.7% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.72 | 60.0 | 4.44e-01 | 90.0% | 87.3% |
| 1jhgA00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.71 | 51.0 | 4.53e-01 | 75.7% | 61.4% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.71 | 58.0 | 4.07e-01 | 88.6% | 87.7% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 48.0 | 4.69e-01 | 70.0% | 64.5% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.69 | 53.0 | 4.77e-01 | 81.4% | 70.2% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.68 | 59.0 | 4.26e-01 | 95.7% | 87.6% |
| 4mloA03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 48.0 | 5.08e-01 | 75.7% | 100.0% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.66 | 56.0 | 3.95e-01 | 94.3% | 81.4% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.66 | 49.0 | 3.90e-01 | 80.0% | 83.8% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 50.0 | 3.85e-01 | 84.3% | 51.2% |
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.64 | 56.0 | 4.25e-01 | 100.0% | 81.8% |
| 3lvyE01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 44.0 | 3.39e-01 | 72.9% | 40.6% |
| 1k6yA01 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.63 | 38.0 | 4.46e-01 | 70.0% | 93.5% |
| 4fe7A03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 52.0 | 4.55e-01 | 95.7% | 72.5% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 45.0 | 3.68e-01 | 77.1% | 42.6% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.82e-01 | 72.9% | 58.6% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 47.0 | 4.26e-01 | 91.4% | 99.0% |
| 4a18Q01 | 1.10.10.1760 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 | 0.57 | 38.0 | 3.89e-01 | 70.0% | 78.3% |
| 3mn2A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 48.0 | 4.28e-01 | 100.0% | 77.8% |
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 44.0 | 3.67e-01 | 88.6% | 85.7% |
| 6u3wB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 44.0 | 3.00e-01 | 94.3% | 48.5% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 36.0 | 2.54e-01 | 71.4% | 83.3% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 33.0 | 3.29e-01 | 71.4% | 62.5% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4659087 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.86 | 56.0 | 6.34e-01 | 77.1% | 85.5% |
| 5080584 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.85 | 53.0 | 6.49e-01 | 70.0% | 100.0% |
| 5003692 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.84 | 56.0 | 5.87e-01 | 75.7% | 75.4% |
| 3943131 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.83 | 53.0 | 5.71e-01 | 72.9% | 76.7% |
| 4071215 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.81 | 55.0 | 6.20e-01 | 70.0% | 89.1% |
| 3254013 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.80 | 61.0 | 6.55e-01 | 80.0% | 95.0% |
| 4400327 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 63.0 | 5.72e-01 | 82.9% | 72.2% |
| 3280314 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.80 | 59.0 | 6.63e-01 | 81.4% | 100.0% |
| 5080070 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.79 | 59.0 | 6.45e-01 | 84.3% | 100.0% |
| 3602804 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.79 | 54.0 | 6.26e-01 | 72.9% | 100.0% |
| 4961949 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.78 | 57.0 | 6.31e-01 | 81.4% | 96.4% |
| 4608916 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 58.0 | 6.46e-01 | 80.0% | 98.2% |
| 3586880 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 58.0 | 6.40e-01 | 80.0% | 100.0% |
| 3957642 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 58.0 | 6.40e-01 | 80.0% | 100.0% |
| 3290335 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 60.0 | 6.22e-01 | 84.3% | 89.2% |
| 5013305 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.77 | 53.0 | 6.13e-01 | 74.3% | 100.0% |
| 4981564 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 57.0 | 6.38e-01 | 82.9% | 100.0% |
| 2417767 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 57.0 | 6.21e-01 | 84.3% | 93.2% |
| 3956306 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 57.0 | 6.31e-01 | 78.6% | 100.0% |
| 3980478 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.76 | 57.0 | 5.00e-01 | 78.6% | 56.0% |
| 4044443 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 56.0 | 6.19e-01 | 80.0% | 98.2% |
| 4194508 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 57.0 | 6.31e-01 | 82.9% | 100.0% |
| 3281912 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 53.0 | 5.94e-01 | 81.4% | 92.7% |
| 3723795 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.76 | 54.0 | 6.00e-01 | 74.3% | 100.0% |
| 4959580 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.76 | 51.0 | 6.00e-01 | 77.1% | 98.0% |
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.76 | 61.0 | 4.48e-01 | 87.1% | 82.8% |
| 3837930 | 101.1.1.347 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Phage_integrase | 0.75 | 56.0 | 6.24e-01 | 82.9% | 100.0% |
| 4173465 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.75 | 49.0 | 5.48e-01 | 72.9% | 85.5% |
| 4031830 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.75 | 52.0 | 6.00e-01 | 80.0% | 100.0% |
| 4680413 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 54.0 | 5.64e-01 | 80.0% | 81.5% |
| 3385608 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 58.0 | 6.21e-01 | 84.3% | 98.3% |
| 4281782 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 55.0 | 5.37e-01 | 80.0% | 72.0% |
| 4618625 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 50.0 | 4.31e-01 | 70.0% | 47.6% |
| 3589967 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.73 | 48.0 | 5.00e-01 | 75.7% | 72.3% |
| 3945143 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 51.0 | 5.79e-01 | 80.0% | 92.7% |
| 5042123 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 59.0 | 5.78e-01 | 87.1% | 84.0% |
| 3985600 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 59.0 | 5.95e-01 | 90.0% | 88.4% |
| 3589854 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 56.0 | 5.86e-01 | 84.3% | 89.2% |
| 3590293 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 52.0 | 5.74e-01 | 77.1% | 96.4% |
| 4606105 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.72 | 55.0 | 4.83e-01 | 81.4% | 69.0% |
| 1267973 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 56.0 | 5.59e-01 | 84.3% | 95.8% |
| 3514120 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.71 | 52.0 | 5.54e-01 | 80.0% | 88.3% |
| 4034069 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 53.0 | 5.83e-01 | 84.3% | 100.0% |
| 3685911 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 55.0 | 4.96e-01 | 82.9% | 76.8% |
| 4067934 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.71 | 54.0 | 4.91e-01 | 80.0% | 73.3% |
| 4981966 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.71 | 63.0 | 4.55e-01 | 100.0% | 87.5% |
| 4959044 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 51.0 | 5.65e-01 | 84.3% | 98.2% |
| 3442013 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.69 | 55.0 | 4.90e-01 | 84.3% | 94.7% |
| 4938260 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 52.0 | 5.58e-01 | 85.7% | 96.7% |
| 4350602 | 101.1.8.14 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 | 0.69 | 53.0 | 5.52e-01 | 88.6% | 90.8% |
| 4441096 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 52.0 | 5.58e-01 | 82.9% | 95.0% |
| 1695424 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.68 | 51.0 | 5.12e-01 | 82.9% | 78.6% |
| 3968456 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.65 | 55.0 | 4.78e-01 | 94.3% | 96.3% |
| 4950777 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.64 | 53.0 | 5.34e-01 | 94.3% | 92.9% |
| 3964894 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.58 | 46.0 | 4.18e-01 | 88.6% | 93.0% |
| 4106457 | 3290.1.1.0 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B | 0.53 | 38.0 | 3.58e-01 | 75.7% | 76.7% |