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MK937613.1__QDH93749.1__SEA_STAB_38__00038

Bact-Vir

MK937613.1__QDH93749.1__SEA_STAB_38__00038

Identity

Accession:
MK937613 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-71
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.75 51.0 3.10e-01 70.9% 14.2%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.70 49.0 5.00e-01 72.7% 98.1%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.70 51.0 3.81e-01 76.4% 70.0%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.70 48.0 3.81e-01 72.7% 86.2%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.69 48.0 3.61e-01 74.5% 67.2%
1nunA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 55.0 4.10e-01 89.1% 92.8%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.67 47.0 3.75e-01 72.7% 41.7%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 46.0 3.57e-01 74.5% 79.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.07e-01 70.9% 73.2%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 37.0 4.24e-01 70.9% 90.9%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 45.0 3.08e-01 92.7% 20.4%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 51.0 3.77e-01 87.3% 97.9%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 47.0 3.62e-01 81.8% 36.8%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 47.0 3.76e-01 80.0% 87.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 4.86e-01 78.2% 100.0%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 48.0 3.14e-01 89.1% 39.1%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 52.0 4.87e-01 100.0% 95.9%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 52.0 4.81e-01 98.2% 74.0%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 46.0 3.42e-01 81.8% 34.9%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 42.0 4.41e-01 87.3% 82.0%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 42.0 2.75e-01 72.7% 20.9%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 4.39e-01 98.2% 96.7%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 51.0 3.80e-01 94.5% 65.2%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.31e-01 90.9% 73.4%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 49.0 3.72e-01 90.9% 61.8%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 41.0 4.17e-01 74.5% 89.3%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 44.0 3.59e-01 78.2% 61.2%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 50.0 4.69e-01 96.4% 82.9%
4qiwB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.59 49.0 3.61e-01 100.0% 89.6%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.18e-01 100.0% 29.9%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.22e-01 100.0% 46.1%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 3.85e-01 96.4% 51.3%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 46.0 3.34e-01 90.9% 82.6%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 44.0 2.76e-01 89.1% 61.5%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 43.0 3.88e-01 81.8% 64.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 4.29e-01 87.3% 97.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.76e-01 96.4% 100.0%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.09e-01 100.0% 31.3%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 48.0 3.38e-01 100.0% 29.8%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 2.96e-01 92.7% 93.6%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 43.0 4.22e-01 92.7% 90.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.32e-01 100.0% 79.1%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 3.62e-01 87.3% 78.5%
3uw8A02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.55 41.0 3.07e-01 80.0% 83.6%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 46.0 3.59e-01 100.0% 55.3%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.54 43.0 3.13e-01 90.9% 35.3%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 2.84e-01 100.0% 17.1%
4mfzA02 3.40.630.120 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.53 43.0 3.31e-01 100.0% 36.7%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 43.0 3.19e-01 98.2% 90.2%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 44.0 2.99e-01 96.4% 86.6%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974596 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.87 53.0 5.34e-01 70.9% 61.8%
5013584 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 52.0 4.84e-01 92.7% 61.4%
3511200 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.71 54.0 4.64e-01 81.8% 55.3%
4997767 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.23e-01 80.0% 88.9%
3827907 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 46.0 4.67e-01 74.5% 69.1%
4188723 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 62.0 3.83e-01 100.0% 43.4%
3347504 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.69 58.0 5.46e-01 98.2% 95.7%
None 0.68 61.0 3.82e-01 100.0% 44.9%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.68 58.0 4.73e-01 100.0% 88.2%
4583471 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.68 61.0 3.80e-01 100.0% 44.3%
3265851 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 46.0 5.06e-01 81.8% 97.5%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.04e-01 89.1% 80.0%
3251013 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 60.0 3.61e-01 100.0% 29.0%
5035552 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 58.0 3.81e-01 100.0% 49.8%
3644147 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 49.0 5.11e-01 87.3% 88.0%
3254426 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 51.0 3.81e-01 83.6% 37.8%
3874056 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 46.0 4.62e-01 74.5% 72.7%
3207726 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.66 59.0 3.59e-01 100.0% 41.2%
5036758 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 55.0 3.48e-01 92.7% 34.3%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.05e-01 89.1% 81.8%
3736787 331.3.1.2 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.65 58.0 3.66e-01 100.0% 67.0%
3500244 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 57.0 3.44e-01 100.0% 29.3%
3624687 64.1.1.9 beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.64 50.0 5.16e-01 92.7% 96.0%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.64 56.0 3.31e-01 100.0% 31.1%
3749834 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.63 44.0 4.41e-01 74.5% 72.7%
4028583 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 56.0 3.50e-01 100.0% 33.4%
4960839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.20e-01 94.5% 50.0%
3896169 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.62 55.0 3.37e-01 100.0% 41.8%
5044373 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.82e-01 90.9% 81.7%
3885750 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.62 42.0 4.36e-01 74.5% 78.0%
3572323 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.62 53.0 3.44e-01 98.2% 38.1%
3280222 9.4.1.5 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF7586 0.62 52.0 4.55e-01 96.4% 76.5%
3552883 64.1.1.9 beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.62 52.0 4.78e-01 98.2% 72.0%
4028139 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.61 43.0 4.34e-01 78.2% 76.4%
3712663 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.60 51.0 4.31e-01 100.0% 55.8%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.70e-01 90.9% 87.3%
4279904 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.59 47.0 3.06e-01 90.9% 38.2%
3939881 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 45.0 4.12e-01 83.6% 72.0%
3750824 5.1.5.75 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.59 52.0 3.19e-01 100.0% 37.4%
3716426 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.58 50.0 3.72e-01 96.4% 90.3%
3574639 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 50.0 3.24e-01 100.0% 39.6%
3278853 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.14e-01 81.8% 81.5%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.01e-01 74.5% 71.7%
4022249 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.58 51.0 3.01e-01 100.0% 22.2%
4030001 5.1.4.621 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Mcl1_mid 0.57 49.0 2.78e-01 100.0% 22.3%
3687101 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 49.0 3.15e-01 100.0% 44.7%
3708854 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.57 37.0 3.83e-01 70.9% 72.0%
1396826 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 45.0 4.27e-01 87.3% 95.5%
3233672 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 44.0 3.84e-01 98.2% 53.0%
3833006 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 44.0 2.83e-01 96.4% 65.5%
4012190 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 36.0 2.29e-01 72.7% 11.7%
3445173 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 42.0 4.10e-01 90.9% 84.6%
3211804 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 46.0 3.02e-01 100.0% 27.2%
3992132 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.54 45.0 3.07e-01 100.0% 54.3%
3236050 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.53 36.0 2.98e-01 72.7% 46.4%
3338669 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 40.0 4.04e-01 100.0% 89.1%
4026161 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.53 43.0 3.42e-01 96.4% 76.8%
3484214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.13e-01 98.2% 57.1%
4163789 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.52 42.0 3.57e-01 98.2% 94.3%
3215840 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 44.0 2.92e-01 100.0% 36.5%
3223155 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 44.0 2.92e-01 100.0% 40.6%
3404356 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 2.77e-01 100.0% 22.8%
3212890 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 44.0 2.93e-01 100.0% 38.0%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 40.0 4.01e-01 90.9% 94.8%
4065466 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.51 40.0 3.55e-01 85.5% 88.7%
5054507 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.45e-01 81.8% 62.7%
3229412 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 43.0 3.59e-01 100.0% 73.3%
3400923 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.51 45.0 4.37e-01 100.0% 90.0%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 39.0 3.98e-01 96.4% 92.7%